HsaINT0185563 @ hg38
Intron Retention
Gene
ENSG00000189420 | ZFP92
Description
ZFP92 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:12865]
Coordinates
chrX:153418322-153418799:+
Coord C1 exon
chrX:153418322-153418355
Coord A exon
chrX:153418356-153418672
Coord C2 exon
chrX:153418673-153418799
Length
317 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
ACAAGAATGCCTTATTTTAGGTG
3' ss Score
5.64
Exon sequences
Seq C1 exon
GATGGCAGCCATTCTCCTGACCACGAGACCCAAG
Seq A exon
GTGAGTGGTGGCCCCTCTCCCTGGCCTCTCCCCCTGGCAGCCCCCGTCTGCTGCCTCCTCATGCCCAGGCCTCTCCAGCTGGGCTGAGCTTAGGCTGCCCTTAGCATCGTTTTCCTTTCCTGAGGCGCACAATCTGGGCTTCCTGCCTCTGTCGGCTGTGCTGCCTGTTTTTCTGTCTTACAACTCGTGCAACCCGAGTCTTTCCACCTGCTGAGCCTTCCAGGGCTCCCCCCGCCCCCCACATTTTGTTTCTGTCAGCTCCTCCAGGGGCCCAGGGGGTTGAATTCCCCTGTGGCCACAAGAATGCCTTATTTTAG
Seq C2 exon
GTGCCAGTATCTTTTGAGGATGTGTCCGTGTACTTCACAAAGACAGAATGGAAGCTTCTGGACCTCAGACAAAAGGTCCTCTACAAGCGGGTGATGCTGGAGAACTATAGCCATTTGGTGTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000189420:ENST00000338647:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains