BtaINT0166022 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016257 | ZNF74
Description
zinc finger protein 74 [Source:HGNC Symbol;Acc:HGNC:13144]
Coordinates
chr17:74563042-74568409:-
Coord C1 exon
chr17:74568339-74568409
Coord A exon
chr17:74563169-74568338
Coord C2 exon
chr17:74563042-74563168
Length
5170 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GAACACGTGTGTCCTTCCAGGAG
3' ss Score
8.61
Exon sequences
Seq C1 exon
ATCCTGCTCGTCCCCTCAAAGAGATTGCAGAAGATACATTGCCTCGGGGTCTCCTGGAAGCCAGGTCTGAG
Seq A exon
GTGAGTGGCTGTCTTTTCTTTTTTTTGAACATCTTGTTCTTTATGAGGAGGGTTGGCATCGTCCTTCCATCATCCAGGCCGTTGGTCATCCAGCGACCCCCGATCTGGGTGCCTGTGCTGCAGTCCTTAGGGAGCTCTGGGTCCGGGTAGGGGAGAGACAGTTCCGGTGACGCCCGGGTGCGCCCTCCAGGCGAGTGTCGCTTGCAGCCGGGCGCAGCCCAGCCGCGGTCCGTCGCTCGGGACTGCTGTGTGCCCAGCATGTGCCAGGAGCGCTCGGCCGCGCACACCTGGTGGGCGGCAGCTCCCATGACACCACTTGGCTCATCTCCACACGCGGGCCCACTGGGATGCTTGCTGCGGTTGATCCTTGTTCGGGGCGTTTTCTGGGAGTAAGTTAGGTAGAAGGATGTGGAACAGCTGATGGGAGGGCTGGGTTGCAGCGCTGGGGGTCAGAGTGACGGTAGACCGTGTGTCCCGATATGCTTTTTCTCTGTACCCAGTTCCTGACACAAGGCCTTCGTGGAAAAACGTGGAATTACGGAGGCTTTGGGGGCTCTGACGGGAGTTGGCCTTGGGGCCGCTTCTGCAGCTGAGTGAAGCACAAATCACTCCTTTTACAGACTTCGGGGTTTTGCTCATCATTTTGTTCCACCACTTACCCGTCTGTCCTCCCCAGTGTTCAGAAAGGTGCAGTTGATAGAGACAGTGTGGGTGAAAGGCTTGGAGGATTGAGTCCTTTGTCATTTTTAGGATTTGGTGATTCTGCTAACCTGTCGCTTGAAAGATAGAAATGACTGTGAAACACGCGTGGTGAGCCGGGCCCGGCTTCTGCGATGCTAGAATGTTCTGTGAAACCTCAGGAGGCATGACGAGCGCGTGCGTAGGTACATGGTCCTTAGTGGGTCATAGATCCAAAAGTCCTGTCAAAGGCGTTTGGAAACTATTTCAGGTCGAGGGGGGTGATGATGGCACTGTGACTCTGGAGAGCGTCCTTGGTAAGTGCAGGCTGAAGAATGTAGGCTGAGATGTTCTGATGTCTGCAGCTGACCTTGAAATGGAGGGAAAAGCGGGGCGTGTGTTGAGAGCACCACCTCGGAGGCACGCCCCTTCTTGTGCACAGATGTTGATCCCGAAACACCAGCTTCCCAGGCTTTGAGTAACCGGTCCTCTCTCTGAAGTGCCCTCCTCCCCAGCAGTCTCGTACTGTGGCAAGGGTTCCTCCCGGCTGGGACAGCCCCCATGGTCTGTTCTGACTCCTCTGCGGGTTGCATTACCAAGTCTGCCTTTGATTCCACACCCTTTTGCTCCCTGCCCTGCAAAATGAAGATACACGGGACGTGGGCTTCTCCAGGTAGGTTGGGAGTGCCCCTAGCAAGGCCTCAACGTGGCTCAGGTCCTGCTCTTGCCTGTCGACACCCCCACACTGAAGCCACGTAGCCGCTGAGAGCTCTGTTAGCAGCTTCGCGTTCTGAGGTCTTGTCTCTGTCCCTTCCGCCTTCTGTCTGCCGGCACCGTCTCGCTCCATCCCTGCGCCTCAGGTTCAGCGTGCGTCCTCACCCCCACCTTCTTGTCTCCCTGAAGTCCACTGGGGTTTTCGTATCAGGCTTGTTGTCGCTGTTCAGTCACTGAGACGTATCCGACTCTGCAACCCCATGGACTGCAGCACGCCCGGCCTCCCTGTCCATCACCAACTCCCGGAGTTCACTCAAACTCATCTCTGTTGAGTCGGTGATGCCATCCAGCAATCTCATCCTCTGTCGTCCCTTTCTCCTCCTGTCTTAAATCTTTCCCAGCATCAGCGTCTTTTCCAGTGAGTCAGTTCTTCGCGTCAGGTGGCCAAAGTATTGGAGTTTCAGCTTCAGCATCAGTCCTTCCAATGAATATTCAGGACTGATTGCCTCTAGGGTGAGCTGGTTGGAACATTGCGTGAAATGTTCCCTTGGTATCTCCAATATTCTTAAAGAGATCTCTAGTCTTTCCAAAGTATTGGAGCTTCAGTATCAGTCCTTCTAATGAACAATCAGGGTTGATTTCCTTTAGGAGTGACTGGTTGCATCTCCTTGCAGCCCATGGGAGTCTCGAGTCTTCTCCAACACCACAGTCAAAAGCGCTGATTCTCTGGCGCTCAGCCTTCTTTATGGGCAGACTTCCTGCCGTACGGTTACACACGGGAAGAGCTCTCCAGTTCTGTGCACGTAGGACGTGGTGAGTGTTGGCACACGCATAGAGCTCTCCAGTTCTGTGCACGTAGGACGTGGTGAGTGTTGGCACACGCGTAGAGCTCTCCAGTTCTGTGCACGTAGGACGTGGTGAGTGTTGGCACACGCGTAGAGCTCTCCAGTTCTGTGCACGTAGGACGTGGTGAGTGTTGGCACACGCGTAGAGCTCTCCAGTTCTGTGCACGTAGGACGTGGTGAGTGTTGGCACACGCGTAGAGCTCTCCAGTTCTGTGCACGTAGGACGTGGTGAGTGTTGGCACACGCGTAGAGCTGTGAGCACGCAGGCAGGACAGCGCTCCCGTCACCCAGCAGGCCCCTTCGTGCCCCTTACAGTCCATCTTCTCCACCTGTCCCCTTGGCAAGCAACATAATTTTGCCTTTTGGAGAATGTCACATGGAATCACCCTTGTGATTGTTTTCAATATTCATCTATTTATTTGCCACCAGGTCTTCGCTTGCGGCTTGCACACTGCTTGTGGCCTGTGGGGTCTGGTTCCCTGACCAGGGATCGAGCCCGGGCCCTGCACTGGGAGCACGGAGCCTCCACCGTTGGACCACCGGGACGTCCCTGTACATGTGATTTTGTTCCTGATTTATCTCACTTAGCATGCTTTTACACCCGTGTCCTGATTTGAGTCAGCAGCTTGTTTTTTGATTGCTGAATGAGACCCCATTCCGTTTTAGGTTGCTTGGCTGCCCTGATGAGACGCCACAGAGTCAGTGGCTCAGGACAGACATGCCCTGTCCCCTGGTTCTGGAGGCCAGAAGTCTGAGGTCAGGCTATTGGTGGGTTTCTTCTGAGCTGCTCTCCTTGGTCTGTGGATGGCTCTTCTCCGTGTCCTCACGCGTCCTTCCCTCTGTACGCATCTGTGTCCAAGTTTCATTTCCTTATCACGACACTAATCTTACTCAGGGCCCATTCTAATGACCTTATTTACCTTAATTACCTCTTTAAAGACCCCATCTTCAAGTCGAGTCGCATTCTAACACATTGGAGCTTAGGGCTTCAACAGACTGATTTCCACACGTGGCACCACTGTACGCGTACCCCCCGTTTGCTGATCTGCTCACCAGCTGATGGACGTTCAGGGGGTGAGTCCAGGTTTAGGCTATGACCAGCAAGCCTGCTGTAAGTATTGGCGGCCACGTCACGGGTGTGTTTTCTCGCGCGTAAATACCCAAGAGCGGGATGGCCGAGTCGTACGCTGAGCACGTGTCTCCTTGTTGGTCTCTGTTGGTCTCGTTGACTGCTCTCTGTTGCTGCTCTTTTCTCTCTTCACTGATTTCTGATTCTTCTTATTTCTTTCCTTCACTTTGGTTTCTTCAAGTTGAAACTTAAGTATTGTTTTGATACCTGTTCTCACATACTATTCACGGCTATAAAGTTCATTCTAAGTCCTCTTCAGGTTTCTGCTGAAAATTTTGATATGTTTTATTTTCCTTTTTCAGTTCAAAGGAGTTTCTACAGTTTTTTGGTGATTTCTCCTTCCACTCTGTATCATTTAGGAGTCTGTTAATTCTAAATAGGTGGAGGGTTGTCCAGGTGTCTTCTATTGTTTCTAATTCTGCTGTAATCAGAGAAGGAACTGTGTGTGAGCTGAAATCTTTCAAATGTACTGCGGCTTACTTTCTTACCAGCATGTGGCTTCTCTTGGTAAGTGTTCTGTGTGCGCTTGAGAAGAACGTGGACTCTGCTTTTGTTGGCTAGCGTGCTCTGGAAATGCCAAGTCAGAGTTGAATCCTGGTGTTATTTGGGTGTCCCACGTTCTGACGTTTTCTGCTTATATATTGTGTCAGTTACTGGGAAAGACTCGTTAAGACCAGCTAGTGTAATTGTGGGTTTGTCTGTTTCTATTTCCATTTCTTTTTAAATGTATCTTGTGTGCCGGGTGCTTGTTGCTGCGCAGGCTGGTCTCTGCTTGTGGCGGGTGAGGGTTACTCTCGAGTTGCGCTGCATGGGCTTTTTGTGGTGGAGTGTGGGCCCTAGCGGAGAAGGCACTGGCAGCCCACTCCAGTGCTCTTGCCTGGAGAATCCCAGGGACGGGAGCCTGGTGGGCCGCCGTCTGTGGGGTCGCACAGAGTCGGACACGACTGAAGCGACGCAGCAGCAGCAGCAGCAGTACTGTTTCACGGACGCTTAATTCTTCTGATTTTGTCGGCTTTTCCTTTTAGTCATTCGGCTGGACTCTGGACAGAGAGGACTTCCTGACGCTTTTGTTGCAGCGCAGGTACTTGACGGTGTTGCCAGCTTCTGCTGTTCGCAGAGTGAATCACCTGTAGGTGCACGAGGAGCCTCTCTCGGATTCCCTCCCGTTGAGGTCGCCTCAGAGCAGAGTGGAGCTCCCTGTGCTGTGGGGCAGGCTCCCCTTAGTTAGGCTTGTGCGCAGCCCCAGTCTCCACTTGTCCCCCCTTTCCCCCTCTGGTGTGTGTGTGAGCGCCGGATTCAGTTCCTTACACGTGCTGGGATGTGGTGACATTCCTCAGTGTGTGGTTGGGTCTTTCTGAGACTTTTAGGTTTCGGTGTGAGCCCAGAGAAGCCTTTAATCTCTGGCTAATCTTGCCCAGAACACCGGGGTTCCGGACCAGAGTCACATGGAGAGTCACGGGGCCTTTCAGGACACTTGGAGCTGGAATGACCGAAGGGGGCACCGCAGACCAGGGGCCAGTGTTGGGGGAGGGTAGGAGCAGGTGAGGGCAGGCACGTGGCCCAGGGAGAGCAGGGGGCCTGGCGGGAAGAAGTGGGCGGCAAGCAGGAAGGACACGGAGGGGTCCGGTCCGCCCTCAGGGCGCAGTGCGGGCCTGTCTGCGGCTGTTTACGTCTACAGCACAGCCTTCCGGCCACACTCAGGACGGCGCCCGAGGTCTCCGATGCTGAGCTCCTGGGTCACCCAGGAACACAGGTGGACTCTACCGTACTGGGTGAGAGAAAACGAACACGTGTGTCCTTCCAG
Seq C2 exon
GAGTCCGTGACTTTCAAGGACGTGGCCGTGGACTTTACCCAGGAGGAGTGGGGCCAACTGGACTCCCCCCAGAGGGCCTTGTACCGGGATGTGATGCTGGAAAACTACCAGAACCTTCTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016257:ENSBTAT00000029408:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.732 A=NA C2=0.326
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development