BtaEX0041514 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016257 | ZNF74
Description
zinc finger protein 74 [Source:HGNC Symbol;Acc:HGNC:13144]
Coordinates
chr17:74563042-74568409:-
Coord C1 exon
chr17:74568339-74568409
Coord A exon
chr17:74565550-74565672
Coord C2 exon
chr17:74563042-74563168
Length
123 bp
Sequences
Splice sites
3' ss Seq
ATCTATTTATTTGCCACCAGGTC
3' ss Score
8.23
5' ss Seq
CCTGTACAT
5' ss Score
-3.62
Exon sequences
Seq C1 exon
ATCCTGCTCGTCCCCTCAAAGAGATTGCAGAAGATACATTGCCTCGGGGTCTCCTGGAAGCCAGGTCTGAG
Seq A exon
GTCTTCGCTTGCGGCTTGCACACTGCTTGTGGCCTGTGGGGTCTGGTTCCCTGACCAGGGATCGAGCCCGGGCCCTGCACTGGGAGCACGGAGCCTCCACCGTTGGACCACCGGGACGTCCCT
Seq C2 exon
GAGTCCGTGACTTTCAAGGACGTGGCCGTGGACTTTACCCAGGAGGAGTGGGGCCAACTGGACTCCCCCCAGAGGGCCTTGTACCGGGATGTGATGCTGGAAAACTACCAGAACCTTCTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016257_MULTIEX1-2/6=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.732 A=0.000 C2=0.326
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
ENSBTAT00000029408fB8057
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCGTCCCCTCAAAGAGAT
R:
CCAGGGAGAGAAGGTTCTGGT
Band lengths:
194-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development