BtaALTD0024890-3/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000016257 | ZNF74
Description
zinc finger protein 74 [Source:HGNC Symbol;Acc:HGNC:13144]
Coordinates
chr17:74563042-74563947:-
Coord C1 exon
chr17:74563892-74563947
Coord A exon
chr17:74563432-74563891
Coord C2 exon
chr17:74563042-74563168
Length
460 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GAACACGTGTGTCCTTCCAGGAG
3' ss Score
8.61
Exon sequences
Seq C1 exon
TCATTCGGCTGGACTCTGGACAGAGAGGACTTCCTGACGCTTTTGTTGCAGCGCAG
Seq A exon
GTACTTGACGGTGTTGCCAGCTTCTGCTGTTCGCAGAGTGAATCACCTGTAGGTGCACGAGGAGCCTCTCTCGGATTCCCTCCCGTTGAGGTCGCCTCAGAGCAGAGTGGAGCTCCCTGTGCTGTGGGGCAGGCTCCCCTTAGTTAGGCTTGTGCGCAGCCCCAGTCTCCACTTGTCCCCCCTTTCCCCCTCTGGTGTGTGTGTGAGCGCCGGATTCAGTTCCTTACACGTGCTGGGATGTGGTGACATTCCTCAGTGTGTGGTTGGGTCTTTCTGAGACTTTTAGGTTTCGGTGTGAGCCCAGAGAAGCCTTTAATCTCTGGCTAATCTTGCCCAGAACACCGGGGTTCCGGACCAGAGTCACATGGAGAGTCACGGGGCCTTTCAGGACACTTGGAGCTGGAATGACCGAAGGGGGCACCGCAGACCAGGGGCCAGTGTTGGGGGAGGGTAGGAGCAG
Seq C2 exon
GAGTCCGTGACTTTCAAGGACGTGGCCGTGGACTTTACCCAGGAGGAGTGGGGCCAACTGGACTCCCCCCAGAGGGCCTTGTACCGGGATGTGATGCTGGAAAACTACCAGAACCTTCTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016257-12-5,13-5,14-5-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.326
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSBTAT00000029408fB8060
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATTCGGCTGGACTCTGGAC
R:
CCAGGGAGAGAAGGTTCTGGT
Band lengths:
183-643
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development