GgaINT1030520 @ galGal4
Intron Retention
Gene
ENSGALG00000018772 | ZNF302
Description
zinc finger protein 302 [Source:RefSeq peptide;Acc:NP_001025866]
Coordinates
chr18:30334-30744:+
Coord C1 exon
chr18:30334-30422
Coord A exon
chr18:30423-30617
Coord C2 exon
chr18:30618-30744
Length
195 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
AGGAACTTCTTTGCTTGCAGGAG
3' ss Score
6.64
Exon sequences
Seq C1 exon
CAGCAGGCTACAGCTACACTTCTGCCTTTCACCTGTGGTCATCGCGGCCTGCAGGAAAGCAGGAAATGGCCAAAGGGCATCCATTTCAG
Seq A exon
GTAGGAGCTTGAGAAAGCAGCTGGGAGAGGTCAAGATGCCCCCATCCAGGGTGCCCACTCAAGGGGAGAGTGAGGTGCCCCCATCCAGCATCTGTGTGCTGGGACAGAGATGCGGCTGGGCCTGGAGTTTCTCTCCTGTCTGAGCTGCTTTCCTGGGCCTTGGCTGTTCCCAGCAAGGAACTTCTTTGCTTGCAG
Seq C2 exon
GAGCCCGTGAGCTTTGCAGAGGTGGCGGTGTATTTCAGCAGGGAGGAGTGGGCGCTGCTGGACCCTGCGCAGCGAGCGCTGTACCGGGACGTTATGCTGGAGACGTACCACTGTGTGGCCTCGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018772:ENSGALT00000040208:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTACAGCTACACTTCTGCC
R:
CAGCGAGGCCACACAGTG
Band lengths:
210-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]