HsaINT0186989 @ hg19
Intron Retention
Gene
ENSG00000197937 | ZNF347
Description
zinc finger protein 347 [Source:HGNC Symbol;Acc:16447]
Coordinates
chr19:53652494-53657046:-
Coord C1 exon
chr19:53656986-53657046
Coord A exon
chr19:53652621-53656985
Coord C2 exon
chr19:53652494-53652620
Length
4365 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GGATGTGTTTTTCATTTTAGGGA
3' ss Score
9.76
Exon sequences
Seq C1 exon
GAAGAACCCTTGAAGAAGAGGAAGAGGAAAGAAAGACAAGTCAGGCATGGCTCTCACCCAG
Seq A exon
GTAAGGTAATATTATCAGTGGATTGTTCTGTCTCTTATTTCTTCTTGAAATGTCATTCTTTGAAGTTGGGAATCTTCTCTGAGTCTGAAGCGTCCTGCCTGACAGGTTTGCTCGCACTTACGCGTGCCTTCCCTCAGTCCCTCTCATCTCACTTAGATTCCATCTCTCGTGACCCAGTGACATGAGCTTGGGAAGAGGCTGCACTGGGCATGGTCCTGGGAAGGGCTCACACCCAGACATGGATGGAGACGGGGTGAGGGTCCTGTGGTGTCAGTGCTGTTGGGCAGCAGGGATTGTTCAGGGGCCACATCTGGATGCACTGTCAGCTCTCTGTGGAGCAGGATTAGAGCAGCTGCACGTGGAAGTCACGTGTTAATGTGCACAAATACTTGCTAAATTATGTAAAATAAGGCTAATAAGGGGAAATTTTTCTGGCTCATTTACATTACATTTGAAGCTCACCAAGTGAGTCACTGTGTTTCTAACCCCAAACTCTTATTAATGACTGGGAATGGAATGGGAATTTTAGACTGACAGACATCAGTGACAGAGGGTTCTTTCATCCCATCATCTATTTTAATACATGAAATCAACCTAAATGGAAAATGCAGGAGAATCATTGAACTATTTTCAGAAAACCCATACAATGGAGACTGGTGTTTCTGCAGGGACCCTTGTGCAACTGGTGCTAGGTGAGAGTGGTTATTATTTTGTTCGGTTATAGGAGCAGAACTTCTTTCCCATTAGAGAGGGTAGAACCACGTTCTTGTTTTGCCAATTATTATTTTTATTTTATTTTTTTTGAGACGGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCATGATCTCAGCCCAATGCAAGCTCCGCCTCCTGCTTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAACTGGGACTACAGGCGCCCGCCACCATGCCCGGCTAATTTTTTGTATTTTTAATAGAGACGGGGTTTCACTGTGTTAGCCAGGATGGTCTCGAACTCCTGACCTCGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCCGGCCTGTTTTACCAATTATTAAATATTCTATTTATTGTATTTATTTATTTTGAGACAGAGTCTCACTCTGTTGCCCAGGCTGGAGTGGTGCAATCTCGGCTCACTGCAACCTCTACCTCCCGGATTCAAGCAATTCTTTCGCCTTAGCCTCCAAAGTAGCTGGGACTACAGTTGCATGCCACCATGCCCAGCTAGTTTTTATATTTTTAGTAGAGACAAGGTTTCACCATGTTGGCCAGGCTGGTCCCAAACTTTTGACCTGAAGTGATCAGCCCACCTTGGCCTCCCAAAACGCTGGGATTACAGGCGTGAGCCACCATGCCCGGCCCTTCAGTGAATGTTTTGTTGTGACATTTTAGCCTGCAAATTTTGAAAATTTACATGTTTTCATGTTAGGAAAGATGTATAGCTCATTCTACATCTTTATTGGAGCCTTCTCTGAATGAGGACAGAGTGGATGTTTTACCTTTTCACTGTTGTTATTACTAAACTGTGTATATGTGACGTGAGTGCGTGTTTTTTTATTAAGCACACATCATGATTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGTGCAATCTCGGCTCACTGCAATCTCTGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCACCCTCCTGAGTAGCTGGAATTACAGATGTCCACCACCACACCCGGCTAATTTCTGTATTTTTAGTAGAGATGGTGTTTCACCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCGTGATCCGCCCTCCTCGGCCTCCCGAAGTGCTGGGATTACAGGTGTGAGCCACTGCACCCAGCCCACACATCATGATTTTAAATAAGTTTTGTGTTTTTTAGCAATTCAAATTGTATCTTAAATATTTTCTGTGTCCTTAAATTTGTTCTCAGCTATCACATTAATGATTTAATAGTAAGAATAGTTACATATTATGGGCATAAATAGATGTGTGTATATATGTAATTACCTTTTATGAAGTTCCATGTTGTTATTCATGAACTTGTTTCAACTTTGCTCATTTAGATCCTTTTCATGTTCTTTTACTTAACTATTTGATTTTTTTTTTTTTTTTTTTTTTTAGACAGTCTTGCTCTGTCATCCAGGCTGGAGTGCAGTGGCACAGTCTCGGTTCACTGCAAGCTCCGCCTCCTGGGTTCATGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGAGACTACAGGTGCCCGCCACCATGCCTGGCTAATTTTTTTGTATTTTTTTAGTAGAGACGGAGTTTCACCATGTTAGCCAGGATGGTCTTGATCTCCTGACCTCGTGATCTGCCTGCCTCGACCTTCCAAAGTGCTGGGATTATAGGCATGAGCCACCACGCCTGGCCAACTATTTGATTCTTTAGGTTTAATTCTTATTCCCAGACACCTGGATTCAGATGCTTGCTCTGACATTTTAGCTCTTTGTCTTGACGCAAGTTTCTTAGAGTGTCTGTCATATACATTTATCTGCTAGTAAGATGGGAACAGATCTTTCTCTCATGGGCTATCATATTCATATACAAGTTAGTACATGCAGGACATTTATTTAGAATAATGCCAGACTGAGCACAGTGGCTTGCGCCTGTAATCCCAGCACTTTAGGAGGCCAAGGCGGGTGGATCATCTGAGGTCAGGAGTTTGAGACTAGCCTGGTCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCGGGTGTGGTGGTGGGTGCTTGTAATTCCAGCTACTTGGGAGGCTGAGGCCGGAGAATCGCTTCAACCCAGGAGGCAGAGGTTGCAGTGAACTGAGATCATGCCACTGCACTCCAGCCTGGGTGATAGAGCGACTCTGTCTCAAAAAAATAAGTAAGTAAGTAAATAAATAAATAGAATAATGCCTTGCACTTGGGAAGTGCTCAGAAACATCTGTCATTGTTATTGCGATGATCACAGTTTTTAGATTCTGACCTTTCTTTAAAGTCACTGTACACATTTTCATCTCGTAAGACATCACTCATGCTCTAGATCATCTAAATACTGAATATCACTTGGTGTGTTAGACATAATATATAGCACTTCAATAAAGATAACCCGGTGTTGGTTTTTTATTTGTATATTTGTGTATTTTTTGTATTGTCTACAAAACTGAGAAATCAACACTGATTTAAAGACTATCATAACCTCTTATAGAAGAGTATAAGAAGACAGAATTAAGGAAACATTCTGCCCAAAAATACCTGTGTGTGTGAGGATGTGGTGAAAACAGACCCAGTTTCTCCTACTGTACTCTCACAACGGAAAACACATCTGTGATCCCAGATGTCCTGGGTTTTCCCACACACACCAAGGGAGCAATTCTGCACTGGACACCAGCTGAGTGACCTCCTATTCAGTTCAATTCTGACACTGTCTACCTGGACATAGCATCAGATCCCACAGGTTGAGGGCTCAATCCAACAAGAGTGTGCCCACTTCAATGCCAGTTGCAAACACAGATGGTCTCTGCTTCTCACTGACTGGCTTATACATCATGAATTCCCATGACCCCCTCCTCAGGTTTGATTAATTTGCTAGAATGGCTCAGAGAAATCAGGGAAACACTTTATTTATATTGACCCATTTATTATATAGGATATTACAGAGTATACAGATGAACAGCCAGATGTAAGCAGTCTATTGGGTAAGGTATGGGAGAAGGAGCATGGCGTGGTGGTGCATGCCTGTAATCCCAACTACTTGGGAGGCTGAGTGCTGTCTTTGGTGGGGGTCGGTGGGGGCGTCCTCAGAGCCTCCGTGTGTTTCCCTATCCTGAAGCTTGTTCAGGCCCTGTCCTTTCGGGTTATTATGGGGGCTTCATTAAGTGGGCACGATTGCTTACATCTTTGGCTACTGGTGATCAGCCGAGCCTTCAGCCCCCATCCCCTCAGGGTAAGTTGGGGGATGGGGCTCGAAGTCCCAACTCTGTAATCCAGCCTTGGTCTTTCTGGTGACCACCCCGCCATTCTGAAACTATCTTGGGGCCTCCAGCCACCAGTCATCTCATTAGCTTACAAAGGCACTTATCACTCCAGAGATTCCAAGTGAGATGTATGTCAGGAAAGGGGGATGAAGACCATATGTATATTTTATTATATCACAACTTGGATATCGGCCCACTTACTCCAGTTTAATCTATTCTGTCTTCTCATTTTATGTGAAGATTGGAGCTTTTCCTTATATCCCCCTGGTGGATGTGTTTTTCATTTTAG
Seq C2 exon
GGACAGGTGACATTCAGGGATGTGGCTATAGAATTCTCTCAGGAGGAGTGGACATGCCTGGACCCCGCTCAGAGGACTTTGTACAGGGACGTGATGTTGGAGAATTATAGGAACCTGGCCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197937-ZNF347:NM_001172675:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=NA C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=100.0)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)