BtaINT0009571 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MWP3]
Coordinates
chr18:60123399-60128000:-
Coord C1 exon
chr18:60127911-60128000
Coord A exon
chr18:60123526-60127910
Coord C2 exon
chr18:60123399-60123525
Length
4385 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CCTAAAATTTTTTGTTTCAGGAA
3' ss Score
9.49
Exon sequences
Seq C1 exon
ATTGACCTCTAAAGTCTCATGTTGCCTGAGGAAGACACACAGAAGATGAGGAAGAGGAAAGAAAAGGAGTCAGGCATGGCTCTTTCTCAG
Seq A exon
GTAAGGTCATATTCTCAGTGATTCTTAGTCTGTCCTTTCTCAAATGCCCTTCTCTGGGCTCGATAATCGTGTCTGACTCTGGACTATCCTGTCTGACTCCTGTGCATGCACACTTACCCAGGGCTTTCCCTCAGGGTCTGTCGTCTCCACTTGGATCCCGTCTCCCCATGACCCGGTGACCTGGCCCTTGTGAGGAGGCTCCCCTGGGTGCCATCCTGGGCAGGGTTTCTCACCCACGGGTTGGAGACAGGGTCTCAGTGCTGTTGGGTGGCAGGGATTGCTTAGGGCCCATGTGGATGCCCTGTCTGCCCTCTGTCAACCAGGATGAAAGAAGTTACACACAGAGGTTGAGTATTAATACGCACAAATGCCTGCTGAATTCTGAAAGAGACAAGTGAAGAGAAATTTTTTCTAATTTTTATAATATATTTGTAGGTAAATGAGTGGGCCACTGGCTTCAAAATCTTAATGATTGGGAATGGAATGGTTACTTGAGAAGCAGACATGAGTGATAGAGGTTGTTTTATTCCATCGTTGATTTTAAAGTATGAAATCAATCTAAATCCATGAGAGTTGGAAATTCTTTGTATCACTTTATATGACGTGTCCTTAGAGGTTTTCTGTTGATTGTGTCCTTTGACATCGCAATTTCTCTGATTGATGCAGGTTAAGTTCCAGCTTTATTGTGTTGTCGGTACTCAGTTTTTAGCACCATTTGTTATTAGGACTGTCCTTTTTCCATTGTGTAGTCTCAGTACCCTCCTTAGTACATTTTACATACATGCAAAGGATTATTTCTGAGTACTCACTTTTGCTCCATTGGTTTGTATATTTATGTTTATATAAGTACCCTTGGAGAAGGCAGTGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGATGGAGGAGCCTGATAGGCTGCAGTCCATGGCGTCGCCAAGAGTCAGACGCGACTGAGCGACTTCACTTTCACTTTTCACTTTCATGCACTGGAGAAGGAAATGGCAACCCATTTCAATGTTCTTGCCTAGAGAATCCCAGGGACGGGGGAACCTGGTGGGCTGCCGTCTCTGGGGTCGCACAGAGTCGGACACGACTAAAGCAACTTAGCAGCAGCAGCAGCAGCAAGTACCCTACCGTCTGGATTACTTAGTGGGTTTTTTGTTGGTTTGTTTTTTATTTTCATTTTTTGATGTGGACAGTTTTTAAAGTCTTTATTGAATTTGTTACAATATTGCTTCTGTTTTATGTTTTGGTTTTTTGGCTTCGAGGCATATGGGATCTTAACACCTTGGCCAGGGATCGAACCTGCACCCCCTACATTGGAAGGCAAAGTCCTAACCACTGGATTGCCAGGGAAGTCCCCTAGATTACTTCATATTATGTTTTGAAATATAGAAAAGGAACACCTCCATCTTTCTTCTTTTTCAAGAGTCTTTTGACAGTTTGCTTGAGATTCTCTATGTATTTTAGCATTTTTCTATTTCTGCCAAAATTGCCATGAGAACTTTGATAGGGATTCCACTGAATCCTAGAGTGGAATCCTAGATTCTGTTTTCCGTAAGTGGACTACTTAGGTTTGTGGGCTTCCCTTGGGGTCAGTGGTCAGGAATCCACTTGCCAATGCAGGAGACACAGGTTCGATCCCTGGGTCAGGCAGATCCCTTAGAGAAGGATGTGGCAACACACTCCAGTGTTCTTGCCTGGGAAATCCCTGGACAGAGGATCCTGGCAGGCTACAGTCCATGGGGTCAGAAAAAGTCAGACATGACTGAGTGAGTAAACAACACCAGCATTTATGGTTTGTACAGTTAAAACCTTGTTTTCTAGGAAAAAAGATAATTTTAATCATTTTTCAGTTTGGGATAATTTTTATTTCTTTTTCTTGTCTAATTGCTCTGGCTAGGAGATTCAGTAGTTTGTTGAACAGTCGTGTGGAGTGTGTACATCTTTGTCCTCTTGATTTGAGAATAAAAGCTTTCATTCTTTCACCTTTGAGTATGATGTTAGGGGTATTCCTTTCATGTATAGGGTTTATTATGTTGAGGTAGTTTACTGTTTTTGTTTTCTTACGTGTTATATATGGGGAAATTGTTGAATTTTGCCACAGGAATTTTTTGCATCAGCTGAGATGATGGTGTGCTTTTTTTTGCTTTATTCTGTTAAGTTGGTGTATCATATTAATTGATTTTTGTGCCTTGAGTCATCCTTGCCTTATAGGAATAAAATCCAGTTGGTCATGATGTCAGATATTCTCTGGGTTGGGTATCAAAATCATGCTGGCCACATTGATTGAGTTTGGCAGTGTTTTCTCCTAACTCTGTGCAAGATATTTAGCAGGATTCAGTTTAGTTCAGTTGTTCAGTCTTGTCTGACTCTTTGTGACCCCATGGACTGCAGCACACCAGGCTTTCCTGTCCATCGCCAACTCCTGGAGCTTACTCAAACTCATGTCCATCGAGTCAGTGATGCTGTCCAATTAGCAGGAGTAGTGGTAATCTTTTTTGTAAATGTTTGGTAGAATTATGCAGTATAGATACCTTTTCCTGAGTTTTTGAGATTTTTGATTACAACTTGAATCTCTAGTTATAATTCTGTTCAAATTTTTTATTTCTTAATATTTCCAACTTAGGTTTAAGTTTCTACAAAATTACTCATATCTTATAGATTATGTAATTTGTGGGGTTTTTTGTTCATAGGACTCCCTTTTAATCCTTTAAAAAATGTTTTTTGAGGCCAGTTGCAATCACTCCTCATGATTTCAAGAGTATATATCTTTTACAGTTGAAATTATATCTTCAGTATATTCCCTGGCCTTGAGTTTTTCCTACACTATCATGTTAATGGTTTCAGTAGTGGGAAGATTACTAACATTTTATGTGTATGTGTGTGTTTGTGTGGGTCCACATATATAATGACCTTTCATGCCACTCTTTTTGAACTTCTTTCAAGTTTTCTCAGTGAGCCCTCTGTCAGTGTAATTGTAAAAATATTTATTGATTTATTTGGCTGCACTGGGTGTTAGTTGCAGCATGTGTGTGCTAGGTCCTCTAGCAGGTATGGAACCCAGGCCCCCTGCATTGGGAGAGCAGAATCTTAGCCACTGGACCACCAGGGAAGTCCCTATCAATGTACTTTTAATTCTCTTTAACTAAGCTATTCGGTTTTTTAGCTTCAGTTCGAGAGCCCAACCCTCAAAGGTTCAGGTGCTTGCTGTGTTATTTCTTAACTTCTTGACTTGGAGCCTCAGAGTGTCTCTAACACAGAATTCTCCTCTGTAAAATGGGAACAGGTCTTTTCCTAATGACCTAATATGTTGATAACAAGTTCATGCTTGTAAAGTACTAATTTAGAGTTATGTTCAAATCCTGGAAGTGTTCAAATACTTTTAGTCATTGCTATTCTTATTATTATCATAATTGAAGGTTTTGACTTTTCTCTAATACTACAGTGGACTTCACCATGTCTAAAGACAGCCTTCATACAGGAGCTCATCTAGATACTGAGTAGCACTCAGTGTTTGTTTATTTTTGGCTGCACTGGGTCTTCATTGCTGTGCATGTGCTTTTCTCTAGTTGCGGTGAATGGGGGCTGGTCTCTAATTACAGTGCTTGAGCTTCTCATCATGGTGGCTTCTCTTGTTGCAGAGCACGGGCTTTAGAGCACAGGCTCAATGGACTTCGTTGCTCCTTGACATGTGGGATCTTCCTGGACCAGGGATTGAATCCATGTCCCCTGCATTGGCAGGTAGATTCTTAGCCACTGGACCACCAGGGAAGTCCTCAACTCAGTGTTTAGAATGTGATATCTAATGCTTCTCCATAGACAACCTATTCTTGAATTTTATTTCTGTGTGTTTTCTAATTGTCCACAAAGATGAAAAATCTGTATTAATTGGAGGATATCATAATCTGTTAGAACAACCATAAGAAATTATAATTAGAGACATATAATTTGCTCCTTAACATGGATCTTATATTTACTTCAGTAGAATCAGTCCTTACACTTACCTCTTCTTTTCATTTTTTAAAAGATGAGAAATATCCTCATGGCCACTTGGGTAAATATTTTTTTGTTGTTATTGAGGTGTAGTTAATTGACAATGTTGCATTAGTTTCAAGTGTACAGCAAAGTGATTCAACTGTATGTATATTTCAAGTGTACAGCAAGATGACTCAGCTGTATATATATTCTTTTTTAGATTCTTTTCCATTACAGGTTATTTCAAGATATTGAGTATAGTTCCTTGTGCAATTCAGTAGGCCCTGTTTATCTGTTTTATATATATTAATAGTAGCATGTGTATGTTCATCCCAAACTCCTAATTTATCTGAGCTTCCTCCCCAACCACTGTGATCCCCTAAAATTTTTTGTTTCAG
Seq C2 exon
GAACAGTTGACTTTCGAGGATGTGGCCATTGACTTCTCTCTGGAAGAGTGGGAATGCCTGGACCCTGCTCAGAGGGCCTTGTACAGGGACGTGATGGTGGAGACCTATAGGAACCTGTTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047053:ENSBTAT00000063211:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development