GgaEX0000287 @ galGal4
Exon Skipping
Gene
ENSGALG00000018772 | ZNF302
Description
zinc finger protein 302 [Source:RefSeq peptide;Acc:NP_001025866]
Coordinates
chr18:30334-31474:+
Coord C1 exon
chr18:30334-30422
Coord A exon
chr18:30618-30744
Coord C2 exon
chr18:31364-31474
Length
127 bp
Sequences
Splice sites
3' ss Seq
AGGAACTTCTTTGCTTGCAGGAG
3' ss Score
6.64
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
CAGCAGGCTACAGCTACACTTCTGCCTTTCACCTGTGGTCATCGCGGCCTGCAGGAAAGCAGGAAATGGCCAAAGGGCATCCATTTCAG
Seq A exon
GAGCCCGTGAGCTTTGCAGAGGTGGCGGTGTATTTCAGCAGGGAGGAGTGGGCGCTGCTGGACCCTGCGCAGCGAGCGCTGTACCGGGACGTTATGCTGGAGACGTACCACTGTGTGGCCTCGCTGG
Seq C2 exon
TTCCACTTCCCGTCCACAAACCCCTGGTGATCACCTTGCTTGAAGGAGGGAAAGAACCCTGGATCCCAGATGTGTGCAGCCCAGAGAAGATGGTGGAAGAGCTTGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018772_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.184
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGGCTACAGCTACACTT
R:
GCCAAGCTCTTCCACCATCTT
Band lengths:
196-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]