GgaEX0000287 @ galGal3
Exon Skipping
Gene
ENSGALG00000000346 | ZNF250
Description
NA
Coordinates
chr18:28834-29957:+
Coord C1 exon
chr18:28834-28905
Coord A exon
chr18:29101-29227
Coord C2 exon
chr18:29847-29957
Length
127 bp
Sequences
Splice sites
3' ss Seq
AGGAACTTCTTTGCTTGCAGGAG
3' ss Score
6.64
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
ACTTCTGCCTTTCACCTGTGGTCATCGCGGCCTGCAGGAAAGCAGGAAATGGCCAAAGGGCATCCATTTCAG
Seq A exon
GAGCCCGTGAGCTTTGCAGAGGTGGCGGTGTATTTCAGCAGGGAGGAGTGGGCGCTGCTGGACCCTGCGCAGCGAGCGCTGTACCGGGACGTTATGCTGGAGACGTACCACTGTGTGGCCTCGCTGG
Seq C2 exon
TTCCACTTCCCGTCCACAAACCCCTGGTGATCACCTTGCTTGAAGGAGGGAAAGAACCCTGGATCCCAGATGTGTGCAGCCCAGAGAAGATGGTGGAAGAGCTTGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000346-'1-4,'1-3,2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.171
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTGCCTTTCACCTGTGGT
R:
GCCAAGCTCTTCCACCATCTT
Band lengths:
178-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]