GgaINT0128543 @ galGal3
Intron Retention
Gene
ENSGALG00000000346 | ZNF250
Description
NA
Coordinates
chr18:22176-31484:+
Coord C1 exon
chr18:22176-23152
Coord A exon
chr18:23153-30382
Coord C2 exon
chr18:30383-31484
Length
7230 bp
Sequences
Splice sites
5' ss Seq
CAGGGAAGA
5' ss Score
3.12
3' ss Seq
GTCCACCAGCACATCCAAACAGG
3' ss Score
-13.74
Exon sequences
Seq C1 exon
GCAAAGTGCTTCAAATGGAGATCCACCCTCACCTACCACCAACGCGTGCACACAGGAGAGAGACCATTTAAGTGTCCTCAGTGTGGGAAGAGCTTCAAAAACAATTTTGGCCTCATCCGCCACCAGCGCATCCACACAGGAGAGAGACCATACAGCTGTCCTCAGTGCCCACAGAGCTTTAGAAGCAGTTCCCACCTCAACCGCCACCAGCGCATCCACACAGGAGAGAGACCCTACAAGTGCCTGGAGTGTGAGAAGAGCTTCAGAAGCAATTCTGACCTCACCTACCACCAGCGCATCCACACAGGAGAGAGACCCTACAAGTGCCATGAGTGTGGGAAGAGCTTCAAAAGCAATTCTGAACTTGTCCACCACCAGCGCATCCACACAGGAGAGAGACCCTACAAGTGCACTGAGTGTGGGAAGGGTTTCAAAAGCAATTCTGACCTTATCCGCCACCAGCTTGTCCACACAGGAGAGAGACCCTACAAGTGCCCTGAGTGTGAGAAGAGCTTCAGGAGCATTTCTGCCCTCATCTGCCACCAGCACGTCCACCCAGGAGAGAGACCCTACAAATGCCATGAGTGTGGGAAGAGCTTCAAAAGCGATTCTGAACTCGTCCACCACCAGCACATCCACACAGGAGAGAGACCCTACAAATGCCCTGAGTGTGGGAAGACCTTCAAAAGAAATTCCCATCTCACCTACCACCAGCGCACCCACACAGGAGAGAGACCCTACAAGTGCAACGAGTGTGGAAAGGGCTTCACAAGCAGTTCTGATCTCATTGTCCACCACCGCATCCACACAGGAGAGAGACCATTTAAGTGCCCTGAGTGTGAGAAGAGCTTCAAAAGAAGTTCTGACCTCATTTACCACCAGCACATCCACACAGGAGAGACACCCTATAAGTGCCCTGAGTGTGGGAAGGGCTTTAGAAGAAGTTCTAACCTCAGCTCCCACAAGCGCATTCACAG
Seq A exon
GGAAGACCAACTGTAGTGGTGCCTGGAGTTTGTGAGAACCTCCAAAAGAATTTCCTGCCTCATGAGCTACCCGCATATTCACCCAGAAGACAGAGCCCCACAGTGCCCCGAGTGTGGGCAGAGCTTCATCCAGAGCCTAAGCTTCATTGCTATCCAAAGAAAATCTCTCACCGTGCGTAGTTTTCTCTTCTGCTCTTCCTGCAAGCAACTTTTTGAACCTGTTTCTTAAGGAAAAGCAGCTGTGCAGGGATGTGCTGTGTGTCTGTGTGCTATGTGTTCCTCTCAGTCATTTCTGAGTCCGTTGATGAAGCAGATATAAGGGTCAGGAGAACAATAATGCCACTCTTGGAGATTTACTGAAAATCGCATGCAGGGTAACGGGGAGGGGGAGAATAAAGTAGTTGAGTTGTCCCTGAGCTTTTGTTTTCACTGCGGTCTCGCCCTATTTTCTTAAAATCAAAGATAATGGGTGAATGGAGGACAGGGAAATGATAAAGGATGGTTTGTTTTTCGTGCTAACTCCAGCCCTTTCTTCATCCGGGGGAAGGCATGTTTGACACACAATCCCATCACCCTTCATAAACATGCTTCACATTGGCTGTACTTCTTTTCTTGAATGCTTTGATCAGGAGCTCAGAGCAGCTGTCAGACACCAAGTGTTGGTTGGCTCCAATAAACCGATGTAAAGCTTAGCTTATTCTTCCTAAATGCATCATCCCAAGACTGAGCAGGTGCTGGAAGTAGAAGGCAGTGCAAAGCCAGATAGAACACATCCATCATATCTCCACAGTATAGAGATTGCAGAGTGCAACTGTCTGGCTGCAGCCTTCCCACCAAATCCTTGTCCATTGAATACTCTTCTCTTCAAAACCATATCTTTCCAGTGTAGAGATAATATGATGTGGGAGCATGTCAAAGGCCTTGTTCAAGTCCAGGTAGATGACATCAGTTGCCCTGTCTCCACCAGTGCCATCACCCTACCTTAGAAGGCCACCAGATTGATCAGGCACAACTGCCCTTGGTAAAGCCATGCTGGTTGTCTGGGATCACCTCCATGTCTTGCATGTGTCTTAATATATCTTCCAGGAGCCTGTTGGTTTTTTTGCTTCTTGCATTTCAGATTGACCAGGATGTCCTTGCTCAGCCATGCAGGTTTCCTTTCTCCTCTGCTTGATTTCTTATGCTATGTGATGGATAGCTCTTGTATTCTCAGAAAGGCATCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCACAGAATAGAATCATAGAATCCTTAGAGGTGGAAGGAACCTTTAAAGGTCATCTACTCCAGCTCCCCTGCAATGAACAGGGACATGCACAGCTAGATCAGGTTGCCCAGGGCCTGATCCAACCTTGCCTTGAAAGTCTCCAGGGACAGAGCAGCCACCATCTCTCCGGGAAACCTGTTCCTCACTATAAAAGACTTTTTCCTTATATCTAACACAGCTTAGTGTCATTGGCAAACATCAACCTCACTGTTGATGTCATCAGTGAAGATATTGAAGAGTATTGGCCCCAGCACCAACCCCTGGGGACACCAGTCATCACCCATCTCCATCTGGACATTGAGCCATTGACCACCACTCTCTGTACTCAATCCTGCAACCATTCTTCATCCATTGAACAGTCTACTCATCAAATCCATATCTTTCCCATTTGGAAAGAAGGATGTTGTGGGGTACCGTGTCAAAGGCCTTACTTTAATCCAGATAGGTGACTTGTGTGGCTCTTCCCTTGTCCATCCATACAGTGACACAATCATGGAAGGCCAGCAGGTTGGTCAAGCAGAACTTACCCTTGGTGAAACTATGCTGGTTCTCCCGTATCACCTCCCTGTCTTCCATGCGCACTAGCATAGCTTCCAGGAGGATCTGCTCCATGATCTTTCCCAGCACAGAGGTGAGACTGACAGGCCGGTAGTTCTTGGGGTCATCCTTTTTATCCTTCTTAAAAATGGGTGTGATGTTACCTTTTTTTCCAGCCACCAGGGACATCACCTGATTGCCACAAGTTTTCAAATATCATTGAAAGTATTATGCAGCCTTCCAGTACAGAAAGGGAGCCTACAAAAAGGAGGGGAGTCAACTCTGCATGTGGGTAGATAACAGCAGGACAAGGGGAAATGGTTTGAAGTTGAAGGAGAGAAGATCTAGGTTGGATATCAGGGGGAAGTTCTTTACCAAGGGTGGTGAGGTGCTGGAACAAGCTGCCCAGTGGGGTTGTGGATGCCCCATCCCTGGAGGTGTTCAAGGCCAGGTTGGATGGGGCCCTGTACAGCCTGGTCTAGTATTAGACATGGAGGCTGGCAGCCCTGCCTGTGGGGTTGGAGCTTGTTGATCCTTGAGGTCCCTTCCAACCTAAGCTGTTCTATGATTCTATGGTGATTCTGTGATGGAGAATGGCTTGGTGACTGCATCAGCTAATTCCGTCAGGACTCTGGGATACGTCTCATTGAGACCCATAGACAGGTCCAGTATTGCATCCCCCATGGTGGGGTCATCAATTACTTGACTCGAGAAATTGTCCTCAGTACATTTCAGGAGCCTCCTCGATTGCCTACAGCTTGCCATGCTACTTTTCCAAAAGATGTCTAGGTGGTTGATGGCCCCCACCAAAACGAGCCCGAGGGGAAACTTGGGGCAGAGGGAGGGGTTTNNNNNNNNNNGAGCCTTCGCGAGGAAGATACGAGCCTTCATCATCACGACCTACCTTTCATGTGCAAGGGGGGGAGGGACTGTACGCTAATGGGCTCTCAGGAATGTAGTGAATATGTATCCGAATTCCTGTCGACTATTGATTATGTATTAGTTTGACTTATATCTATAGCACGATTTCTTCAGACGGTGTGCAAGTTAGGTGGAACGATCCCCCTTGCACCAGGGTGTACGCGCGTCTCCAATAAACACATACCTGCTCTATATCCTTACTGGCTATAGGGTCTGATTTCCGCATGTCAGTTTGGCACCTCAGATTGGACCCACTCTGTTCGGCTGCAGGACCTGCTGAGAGAGGGGACGCCTTTGGCGCGCCCCAAGATTTCTTGGAAGGACTCCCTTCCTCACCCGATCACTGCAGGGACAGACAAGGACTATCCATGGGTGAACCAGGTATGTGTATGGAAAAGGGGGAACCCATAAGGCATGAGGAGACGTCCTATGCAGGGTATGAAGGAGTGTGCCTGCTCCTCCCCCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGCCGGCTTTCTCATCGGCATCCTGTTTTCTCTAACAAGGTCATACCTGACCTTGCGCGTAACAAGGTTGCCCCTTTAGATGCACAGTGTCTGCATGGCTTTTCTCAGTCAGCCAGTCATCAATAAATCTCTCCACAATCATCATCTGCTGAGTGTTCGGTACCATGTATCTAATCATTTCAAGTCAAGCTGACTTTCAGAAAAATCTTAAAGTTTGCAGCTGATCGACTAATGTACTAGTGTTATTATGATTCCAACTAAAGGACATCATCAGCACTGTGAATGGGTTCTCGGGAATGTAGTGAATATGTATCCAAATTCCTGTCAACTATTGATTATGTATTAGTTTGACTTATATCTATAGCATGATTTCTTCAGACGGTGTGCAAGTTAGGTGGAACGATCCCCCTTGCCCCAGGGTATACGCGTGTCACCAATAAACACATACCTGCTCTATATTCTTACTGGCTATAGGGTCTGATTTCCGCACGTCACTGCTACTCATTGTCTTCCTATGCAAGTTCTTGTGTGCAGGCCAGGCGGGAGGAGGAAGGTGGGAGAAAGAAAGAAGGGCAGAGAGGGGAGCACACTGGCGCACTGGCTTTGCTGTGGAGGAAGCCTGGTGAGAGCAGTACTGCTGATCTAAGCCCCAGCTGGTTTTAACCCTCAGGCAGTTCCCTGCAGGTGGGCTGAGGAGGGTGTTGTTTGTATAGGGGTTGCTGTATTCTCTCACACCTCTCATGCCATTTCTTGTCCCAGCAGGCTACAGCTACACTTCTGCCTTTCACCTGTGGTCATCGCGGCCTGCAGGAAAGCAGGAAATGGCCAAAGGGCATCCATTTCAGGTAGGAGCTTGAGAAAGCAGCTGGGAGAGGTCAAGATGCCCCCATCCAGGGTGCCCACTCAAGGGGAGAGTGAGGTGCCCCCATCCAGCATCTGTGTGCTGGGACAGAGATGCGGCTGGGCCTGGAGTTTCTCTCCTGTCTGAGCTGCTTTCCTGGGCCTTGGCTGTTCCCAGCAAGGAACTTCTTTGCTTGCAGGAGCCCGTGAGCTTTGCAGAGGTGGCGGTGTATTTCAGCAGGGAGGAGTGGGCGCTGCTGGACCCTGCGCAGCGAGCGCTGTACCGGGACGTTATGCTGGAGACGTACCACTGTGTGGCCTCGCTGGGTGAGGGCTTTGCTGCTGTTCCTACTTATGTGGGCACCTCTGGCTGTGCAGAATATGCCTTTTCAAGTAGGGTGTGGACTAAATGCAGTGCAAGTATTTATAGATTAACACAACAGCATGAACAAATGAATCACAGAGAAACATGAGTTTCAGAATGTTTGAGTGCACTCAGTACTGTGCTGAAAGCCACGGAGTCACTGCTGGCAAGCAGGCATCATCCTGGAGGGGAGTACCAGAGCCCTGCAAGCAGCCCTTGTGCTGCTGCACTGCATGGTGCCACCAGCTCCAGCACCCAGATGACTCCTAGGTAACTCCTTTAGCATGAAGTGCTTTACTATTCCCTTCCCACAAACCTTTTTGAAGCCTTGGGCTTTGGGCAGTTTGGAAAAAGAATGAACTAAACGTCCTGAAGGGAAAGTTAAAGAACATGTCTCTGCATTACTTTCAGAGATGTGGGATGGGCACTGGGCTCCAAAGGAAGGCAGTATGTGTTGGCCAGTGTCCTTCAGGCCCTAACTATGGTTTCACAGTGGGGAGGGACACACAATAGAGTTGCTGGAGAAGCAGCTCTACCAGAGTCATGGAAATGCTCTCATCTCCACTCTTTCTATCAATTAAGTTCCACTTCCCGTCCACAAACCCCTGGTGATCACCTTGCTTGAAGGAGGGAAAGAACCCTGGATCCCAGATGTGTGCAGCCCAGAGAAGATGGTGGAAGAGCTTGGCCCAGGTGAGGTTGGGGGGAAAAAGAGAAGGTTGGGGCTGGCCAAAGCTATTTCTGTCTGGGCAGTATTTTGGCTACTGTATGCTATTCCTGGCTTTCTTCTGTCATCCAGCAGCAGATGTGACGACAGCTATGAAGGAGGATGTGCAGAAAAGTAAAGTGTCTGAAAGGCAGAGCAGCTGTGTCTCAGAGGGAGAAAGCAGAAGGGATGTGCAAGGGGCCCTGGAACAAGGAGAGCACTTCAAGAAGCCACTGGGAAACCATACGGGAAGGACAGCAAGGAACCCCTTGGACTTAAGCACAGCTCAAAAGCAGCATGAAGAGGTGAGGAGCAAGGAAGTGTGCCAGAAGAGAAGGCAGAACCCATGTGATGAGTGTGGGAAAAGCTGTGAAAGCAGTTCTGATCTCATTGTCCACCAGCACATCCAAAC
Seq C2 exon
AGGGGAGAGACCCTACAAGTGCTCTGAGTGTGAGAAGAGTTTCAAAAGGAGTTCTCACCTCTCCTACCACCAACGCATCCACACAGGAGAGAGACCCTACAAGTGCCCTGAGTGTGGGAAGGGCTTCACAGGTAGTTCTGACCTCAGTCGCCACCAGCTCATTCACACAGCGGAGAGGCCATTTAAGTGCCATGAGTGTGGGAAGACCTTCAAAAGCAGATCTGACCTCAGCCGCCACCAGCGCATCCACACAGGGGAGACACCATACAGCTGTCCTCAGTGCCTACAGAGCTTTAGAAGCAGTTATGACCTCACCCATCACCAGTGCATCCACAAAGGAGAGAGACCCTACAAGTGTCCTGAGTGTGGGAAGAGTTTCACAAGCAATTCTGTCCTTGTCCGCCACCAGCGCATCCACACAGGAGAGAGAGCATTTAAGTGTCCTGAGTGTGGGAAGAGCTTCAAAAGGTGTTCTGGCCTCACCTACCACCAGCGCATCCACACAGGAGAGAGACCTTTTAAGTGCTCTGAGTGTGGGAAGGGATTCACAAGCAGTTCTGGCCTCACTTACCACCAGGGCACCCACACAGGAGAGAAACCATACAGTTGTCCTCAGTGCCCGAAGAGCTTTACAAGCAGTTCTGGCCTCAGCTACCACCAGCGCTTCCACAGAGGAGAGAGACCATTTAAGTGCTCTGAGTGTGGGAAGGGATTAACAAGCAGTTCTGGCCTCACCTACCACCAGCGCATCCATAGAGGTGAGAGACCATTTAAGTGTCCTGAGTGTGGGAAGAGCTTCAGAAGCAGTTCTGACCTCACCCATCACCAAAGGATCCACAAAGGAGAGAGACCATTTAAGTGCCCTGAGTGTGGGAAGGGCTTCACAAGCAATTCTGTCCTTGTCCACCACCAGCGCATCCACACAGGAGAGACACCATTCAAGTGTCCCAAGTGTGGGAAGAGCTTCACACGCAGTTCTGCCCTCAGGTGCCACCAGCGAATCCACAGAGGAGAGAGACCATTTAAGTGCTCTGATTGTGGGAAGGGATTCACAAGCAGTTCTGACCTCATCTACCATCAGTGCTTCCACATAGGAGAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000346:ENSGALT00000040211:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=NA C2=0.060
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=8.0),PF134651=zf-H2C2_2=WD(100=8.0),PF134651=zf-H2C2_2=WD(100=8.0),PF134651=zf-H2C2_2=WD(100=8.0),PF134651=zf-H2C2_2=WD(100=8.0),PF134651=zf-H2C2_2=WD(100=8.0),PF134651=zf-H2C2_2=WD(100=8.0),PF097235=Zn-ribbon_8=WD(100=13.2),PF134651=zf-H2C2_2=WD(100=8.0),PF134651=zf-H2C2_2=WD(100=8.0),PF097235=Zn-ribbon_8=WD(100=13.2),PF134651=zf-H2C2_2=WD(100=8.0),PF134651=zf-H2C2_2=WD(100=8.0),PF134651=zf-H2C2_2=PU(34.6=2.8)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(61.5=4.3),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.1),PF132481=zf-ribbon_3=WD(100=10.9),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.1),PF097235=Zn-ribbon_8=WD(100=11.4),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]