GgaALTA0000111-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000000346 | ZNF250
Description
NA
Coordinates
chr18:29847-30850:+
Coord C1 exon
chr18:29847-29957
Coord A exon
chr18:30064-30066
Coord C2 exon
chr18:30067-30850
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GGCTTTCTTCTGTCATCCAGCAG
3' ss Score
5.47
Exon sequences
Seq C1 exon
TTCCACTTCCCGTCCACAAACCCCTGGTGATCACCTTGCTTGAAGGAGGGAAAGAACCCTGGATCCCAGATGTGTGCAGCCCAGAGAAGATGGTGGAAGAGCTTGGCCCAG
Seq A exon
CAG
Seq C2 exon
CAGATGTGACGACAGCTATGAAGGAGGATGTGCAGAAAAGTAAAGTGTCTGAAAGGCAGAGCAGCTGTGTCTCAGAGGGAGAAAGCAGAAGGGATGTGCAAGGGGCCCTGGAACAAGGAGAGCACTTCAAGAAGCCACTGGGAAACCATACGGGAAGGACAGCAAGGAACCCCTTGGACTTAAGCACAGCTCAAAAGCAGCATGAAGAGGTGAGGAGCAAGGAAGTGTGCCAGAAGAGAAGGCAGAACCCATGTGATGAGTGTGGGAAAAGCTGTGAAAGCAGTTCTGATCTCATTGTCCACCAGCACATCCAAACAGGGGAGAGACCCTACAAGTGCTCTGAGTGTGAGAAGAGTTTCAAAAGGAGTTCTCACCTCTCCTACCACCAACGCATCCACACAGGAGAGAGACCCTACAAGTGCCCTGAGTGTGGGAAGGGCTTCACAGGTAGTTCTGACCTCAGTCGCCACCAGCTCATTCACACAGCGGAGAGGCCATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000346-4-6,4-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.171 A=NA C2=0.304
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=9.9),PF134651=zf-H2C2_2=WD(100=9.5),PF134651=zf-H2C2_2=WD(100=9.9),PF134651=zf-H2C2_2=WD(100=9.9),PF134651=zf-H2C2_2=WD(100=9.9),PF132481=zf-ribbon_3=WD(100=15.3),PF134651=zf-H2C2_2=WD(100=9.9)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATGGTGGAAGAGCTTGGC
R:
TCTCCCTCTGAGACACAGCTG
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]