GgaEX1065391 @ galGal4
Exon Skipping
Gene
ENSGALG00000018772 | ZNF302
Description
zinc finger protein 302 [Source:RefSeq peptide;Acc:NP_001025866]
Coordinates
chr18:30618-37990:+
Coord C1 exon
chr18:30618-30744
Coord A exon
chr18:31364-31474
Coord C2 exon
chr18:31581-37990
Length
111 bp
Sequences
Splice sites
3' ss Seq
CACTCTTTCTATCAATTAAGTTC
3' ss Score
5.17
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GAGCCCGTGAGCTTTGCAGAGGTGGCGGTGTATTTCAGCAGGGAGGAGTGGGCGCTGCTGGACCCTGCGCAGCGAGCGCTGTACCGGGACGTTATGCTGGAGACGTACCACTGTGTGGCCTCGCTGG
Seq A exon
TTCCACTTCCCGTCCACAAACCCCTGGTGATCACCTTGCTTGAAGGAGGGAAAGAACCCTGGATCCCAGATGTGTGCAGCCCAGAGAAGATGGTGGAAGAGCTTGGCCCAG
Seq C2 exon
CAGCAGATGTGACGACAGCTATGAAGGAGGATGTGCAGAAAAGTAAAGTGTCTGAAAGGCAGAGCAGCTGTGTCTCAGAGGGAGAAAGCAGAAGGGATGTGCAAGGGGCCCTGGAACAAGGAGAGCACTTCAAGAAGCCACTGGGAAACCATACGGGAAGGACAGCAAGGAACCCCTTGGACTTAAGCACAGCTCAAAAGCAGCATGAAGAGGTGAGGAGCAAGGAAGTGTGCCAGAAGAGAAGGCAGAACCCATGTGATGAGTGTGGGAAAAGCTGTGAAAGCAGTTCTGATCTCATTGTCCACCAGCACATCCAAACAGGGGAGAGACCCTACAAGTGCTCTGAGTGTGAGAAGAGTTTCAAAAGGAGTTCTCACCTCTCCTACCACCAACGCATCCACACAGGAGAGAGACCCTACAAGTGCCCTGAGTGTGGGAAGGGCTTCACAGGTAGTTCTGACCTCAGTCGCCACCAGCTCATTCACACAGCGGAGAGGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018772_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.184 C2=NA
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGGAGACGTACCACTGT
R:
TCCTCACCTCTTCATGCTGCT
Band lengths:
253-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]