GgaINT1030522 @ galGal4
Intron Retention
Gene
ENSGALG00000018772 | ZNF302
Description
zinc finger protein 302 [Source:RefSeq peptide;Acc:NP_001025866]
Coordinates
chr18:31364-32367:+
Coord C1 exon
chr18:31364-31474
Coord A exon
chr18:31475-31583
Coord C2 exon
chr18:31584-32367
Length
109 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTTCTTCTGTCATCCAGCAGCAG
3' ss Score
5.91
Exon sequences
Seq C1 exon
TTCCACTTCCCGTCCACAAACCCCTGGTGATCACCTTGCTTGAAGGAGGGAAAGAACCCTGGATCCCAGATGTGTGCAGCCCAGAGAAGATGGTGGAAGAGCTTGGCCCAG
Seq A exon
GTGAGGTTGGGGGGAAAAAGAGAAGGTTGGGGCTGGCCAAAGCTATTTCTGTCTGGGCAGTATTTTGGCTACTGTATGCTATTCCTGGCTTTCTTCTGTCATCCAGCAG
Seq C2 exon
CAGATGTGACGACAGCTATGAAGGAGGATGTGCAGAAAAGTAAAGTGTCTGAAAGGCAGAGCAGCTGTGTCTCAGAGGGAGAAAGCAGAAGGGATGTGCAAGGGGCCCTGGAACAAGGAGAGCACTTCAAGAAGCCACTGGGAAACCATACGGGAAGGACAGCAAGGAACCCCTTGGACTTAAGCACAGCTCAAAAGCAGCATGAAGAGGTGAGGAGCAAGGAAGTGTGCCAGAAGAGAAGGCAGAACCCATGTGATGAGTGTGGGAAAAGCTGTGAAAGCAGTTCTGATCTCATTGTCCACCAGCACATCCAAACAGGGGAGAGACCCTACAAGTGCTCTGAGTGTGAGAAGAGTTTCAAAAGGAGTTCTCACCTCTCCTACCACCAACGCATCCACACAGGAGAGAGACCCTACAAGTGCCCTGAGTGTGGGAAGGGCTTCACAGGTAGTTCTGACCTCAGTCGCCACCAGCTCATTCACACAGCGGAGAGGCCATTTAAGTGCCATGAGTGTGGGAAGACCTTCAAAAGCAGATCTGACCTCAGCCGCCACCAGCGCATCCACACAGGGGAGACACCATACAGCTGTCCTCAGTGCCTACAGAGCTTTAGAAGCAGTTATGACCTCACCCATCACCAGTGCATCCACAAAGGAGAGAGACCCTACAAGTGTCCTGAGTGTGGGAAGAGTTTCACAAGCAATTCTGTCCTTGTCCGCCACCAGCGCATCCACACAGGAGAGAGAGCATTTAAGTGTCCTGAGTGTGGGAAGAGCTTCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018772:ENSGALT00000040208:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.184 A=NA C2=0.328
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=9.9),PF134651=zf-H2C2_2=WD(100=9.5),PF134651=zf-H2C2_2=WD(100=9.9),PF134651=zf-H2C2_2=WD(100=9.9),PF134651=zf-H2C2_2=WD(100=9.9),PF132481=zf-ribbon_3=WD(100=15.3),PF134651=zf-H2C2_2=WD(100=9.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCAGAGAAGATGGTGGAA
R:
TCCTCACCTCTTCATGCTGCT
Band lengths:
250-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]