GgaALTA0000111-2/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000018772 | ZNF302
Description
zinc finger protein 302 [Source:RefSeq peptide;Acc:NP_001025866]
Coordinates
chr18:31364-32367:+
Coord C1 exon
chr18:31364-31474
Coord A exon
chr18:31584-31586
Coord C2 exon
chr18:31587-32367
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTTCTTCTGTCATCCAGCAGCAG
3' ss Score
5.91
Exon sequences
Seq C1 exon
TTCCACTTCCCGTCCACAAACCCCTGGTGATCACCTTGCTTGAAGGAGGGAAAGAACCCTGGATCCCAGATGTGTGCAGCCCAGAGAAGATGGTGGAAGAGCTTGGCCCAG
Seq A exon
CAG
Seq C2 exon
ATGTGACGACAGCTATGAAGGAGGATGTGCAGAAAAGTAAAGTGTCTGAAAGGCAGAGCAGCTGTGTCTCAGAGGGAGAAAGCAGAAGGGATGTGCAAGGGGCCCTGGAACAAGGAGAGCACTTCAAGAAGCCACTGGGAAACCATACGGGAAGGACAGCAAGGAACCCCTTGGACTTAAGCACAGCTCAAAAGCAGCATGAAGAGGTGAGGAGCAAGGAAGTGTGCCAGAAGAGAAGGCAGAACCCATGTGATGAGTGTGGGAAAAGCTGTGAAAGCAGTTCTGATCTCATTGTCCACCAGCACATCCAAACAGGGGAGAGACCCTACAAGTGCTCTGAGTGTGAGAAGAGTTTCAAAAGGAGTTCTCACCTCTCCTACCACCAACGCATCCACACAGGAGAGAGACCCTACAAGTGCCCTGAGTGTGGGAAGGGCTTCACAGGTAGTTCTGACCTCAGTCGCCACCAGCTCATTCACACAGCGGAGAGGCCATTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018772-3-5,3-4,3-3-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.184 A=NA C2=0.328
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=9.9),PF134651=zf-H2C2_2=WD(100=9.5),PF134651=zf-H2C2_2=WD(100=9.9),PF134651=zf-H2C2_2=WD(100=9.9),PF134651=zf-H2C2_2=WD(100=9.9),PF132481=zf-ribbon_3=WD(100=15.3),PF134651=zf-H2C2_2=WD(100=9.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATGGTGGAAGAGCTTGGC
R:
TCTCCCTCTGAGACACAGCTG
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]