RnoINT0169470 @ rn6
Intron Retention
Gene
ENSRNOG00000022164 | Zscan2
Description
zinc finger and SCAN domain containing 2 [Source:RGD Symbol;Acc:1584548]
Coordinates
chr1:142682101-142695475:+
Coord C1 exon
chr1:142682101-142682602
Coord A exon
chr1:142682603-142693409
Coord C2 exon
chr1:142693410-142695475
Length
10807 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
GTATGTTTTCTTCCTTTCAGATT
3' ss Score
11.81
Exon sequences
Seq C1 exon
TGTTTCTTGTTAAGATTGGAGGAAAGACAGCCTTCTCAGAGAGCCTGGCTGGAGACAGGTGTGAGACTTGAAGCCTCTGTGATCATCCAGGAAGCTGCAATGGCAGCTGAAGTGCCAGCAGTGAGCACTCCCCTCAGCCCTTTGGCTCAGGTGCCTCAAGAAGAAGATGAACAGGCAGAGGTTACCACTATGATCCTGGAGGATGATTCGTGGGTACAGGAAGCAGTGCTGCAGGAGGATGGCCCCGAGTCTGAGCCCTTTCCCCAGAGTACTGGAAAAGGCAGCCCTCAAGAGGAGGGTACAGCTGAGGGACCTCGGGGTGCGCTTGTCCGATTTCGGGAGCTCTGTCGGCGCTGGCTGAGGCCAGAGGTGCACACTAAGGAACAGATGCTGACTGTGCTTCCAAGAGAGATTCAGGCCTGGCTGCAAGAACATCGTCCTGAGAGCAGCGAGGAGGCAGTGGCCCTGGTGGAAGACTTGACCCAGACTTTTCCGCACAATG
Seq A exon
GTAAGATGCAGAACCACATAGGGTGAGGGTGGGAGCCTTCTGAGGTGCAGTAGTGTCGGGTTTTGTGTCTGTGTGTGTGTGTGTGTGTGCTGTGTGTGGTTGGGTAGTGTTCCTTGAGCAGAGTAGGAGATGGGTTTGTCTCTCCCTGTCCTGTGCACCAGCAGGACCATCGCTCTTTTAATCCCCTCTCTGTGCGCGGAACTCCAAATTTCAGTTCCTGAGGGAACTTGGTAGGGGCTGTTCTGGAGCTCCCCATTTGCTCCACACTAAACACAGCCTTTGACTTGTTTATTCCAGGGTTGAAAGTTTTCTGAGATTCATGGGTATAGTAAAGTTCCAATAGTAAATAAAAATGCCTGCCTGGCAAGCACAAAGCTATCTGGAGCTATTTTTTGTTTCTATTTGTGATTTTTAATTTTTCTTGTTATAGAGCCAAAGTGTTTATTGTTGTCTTGTTCTTCCTTGTTGTTGTTGTTGTTCTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTGCTCCTCTCCTGCTCCTCCTCTTCCTCCTGCTCCTGCGCTCGGCTCGCTGCGTTCCTCCGTCCTCTTCGCTCCTCCTCCCCTGCTCCTCCTCCTCCTGCTCCTTCCTCCTCCCGTGCTTCCTGCTCCTCCTCCTCCTTCCTCCTCCTATTCCTCTGCCGGTCGCGTGCGCTGTGTGCGTTGCGCGTGTTGTTCCTTCTTCTTTCTTCCTTCTTCCTTCCTCCTTCTTCCTTCTTCCTTCTCCCGCTTCTTGATAGGGTCTCATTATGTAGCCCTGACTGGCCTAAACTCACTGTCTAGCCAGGCTGACTTCAAACCCACAAAGATCTGCCTGCCTCTGCCTCAAGAATAAAACATTCTTCCCTTACGAGGAACAGAACATTTCTGTTGGTTTGCAGGTATAAGCACAAAAGCGACCTCTGTAACCCACCCCATGGTCCTTTCAGTTGACTGTAACCATTCAAATAGTCCCAGCAACTAGAATGAAAGCATGCAATTCTTTTCAAAGTGGTCGTTTTAAGAAACCATGATAAACAACTGTCTGGGATTTCTGTGGTGTAATGATATCGTAGATCTTTAAAGAGTAATTGGCCACACCTATTATCCTAGTACTTAGAATTGAGGCAGGGGATTGCAAGCTAAGTCTCTGTATATAGAATAGATTCCATCTGGAGAACTAAAAAGAAAGGTAATTCCAGACAAGCTCTTTATGTGCTTTGTTGGTAATGAGTTCTGGATCCTTGTCTGGTTGGCTGTCCTGTGTGCATTTGGCCTTGGGCTGTAAACTGTGCTCATTTCCCTAGGATAATTTCAGGACCCATAGGATGTGGGAGCTTTGTTCTGATGAAGTACTCTCATCTGGAGTTCAGAAGGGCCTGTAGAGAGGGCAGGCCAAATCAGGGAAGCCTTCGTGGAAGACATGGACCCAGAGTAGGAGGCTGCAGAATGGAGTAGAAATGGGAAGCAAGGAGGAAGCTATGAGTGCTGAGAGGAGCCGTGCGTAGCCAAGGCTCTGAAGTGGGGGAGTGGAGGAAGTAGGTTTCTTCAGATTCAGAGATGGCTTGCTGGTTGGATTGGAAAGTGTCTTCAGGAAGTGGTGGGAGTTTGGGGGCAGGGAGGATAGAGGTTTGAATGAAATGCCATTACCCTCAGCAGGTTCTTGAACTAGGCCCTGTGGGCACGAGAGGAAGCTGAGCTTGGCAACAGGATGTAGGTTTGATTAGGTGGAAGAGAGGCGAGAGGTTGGAGAGCAAGTCAGGAAGCCGCTTGGTCATGGGGTGTGCAGTGATGAGAGTCTGGCAGAGGGTGAGGTTGGTCAGGATGTGTGAGAAAGAACTAGCAGTGTGAATAGCATCTCTGGAGTTCTTTCTCCGGCCCTCAGTCTGCTGGGAGATGTGTGGATTGTTGTCCTTAGAGGAGGAGCGACCCACTTTAAGATCACGCAGCTGGTATGAGGCAAAACCAAGACGACTCCTGTTCTTAAGCATGCCATCGAATGAGCGGTCCTGACAGCTCCTAGTGAGGTGCTGAGGGAGGTCCCAACAGGGAGTAGGGCAGAGTACTCTGTACCATCCAGTCCGGAGGACTGAGCCTAAGCCTGGGACAGGAGAGCATGAGGAGAGGGTAGTTTAGGGCAGAGGGCATGACAGCAGCCAAGAACTGAGAGATATGGAGAAGTCTGTCCTCAGAAGAAAGGTCCGGGCTTAGAGGACTGACTGAAACTAGCTCGGCACTGGGCACCTTATATTGGCACTCACACCAAGAATCTTGTGAGGTGAGTGGCATTGTCAGTCGACAGATAGGAAGCTCGATAGCTTCACACAGCTGTCATTCAGCAGAGCCAGGACTCAGGTCTGTTTGTGTCAGCATGAGTTTATCGGCGCTAAGTTTTACTTGAAGTGAAGTATTTTAACTTCTTCGACTCTGACAGGTAACTTCCTTAGGGGTGTGCTTGAGATCAAACCTAGGAGCTGGATCGTGTGAGACAAGCACTGAATCACTGAGCTACACCTACAGCCCAGTAACTTGACTAATTAATTAGTCTTTGAAATGGAATTTTGCATATTCCCAGCTGGTCTAAAGTTGGTATGTAGTTAAGGATGAACTTGAACTTTAAAAAAAATTTTTTTTTACTTATTTAATTTGATGTGCATGGGTGTTCTGCCTGCATGCATGTCTGTGTACCATGTATATGCCCGGTGCCCTCAAGGGTCAGAAGAGGGCATCAGATCTCCTGTATTTTCGAACCACACTCTCAGCTGACAAGTGGGTGCTGGGAATCGAACCTTGGTCCTCTGGAAGAGCAGCCAATGCACCTAGCTGCTAAGCCCTTTACAGCCGCACCGTGAACGCTGAGGGCCTGCTTCACTGGATAGGGTTGTAGATGTGTGCTGGTGTCCTGTTTTTGTGTTGCTAAGGCATCAAACTCAGGGCATCTCGCCTCTTGGGCAAGCACCTACCAACCTAACTACACCTTTACTCGGTTTCTGTTTTGAGACAAGGTCTCACATTGTAGCCTAAATTGGCCTCGGTCTTATGGTAATCCTCCTGTTTCAACCTCCTGAATTCTTGGCCTACTGGATATGCTACCACATTCGACTTAATATTATACTTTGTACAAAGAAGAAAGAAAAAAGAAACTCTCTCGCACTGTTTCAGACTTCCCTTGCCTTCTGATGGCTATGGCAAGTTTATAAGGAACTTGAGGATTTCCACATTATCTCAGAGGCTTGGGCTGAGGTCTCACCCAGCTTTGCAGGGCCTTCCTTTCTCACTGGTCATCTGAGATGGGGGATTCTCCCCAGAGGAATCAGGTGGTGACCCCTGACTTCTGACTCTAAGATTATCTCTGCTGGCCTCCATTTGATAACACATCTTGCCCTTCTCCCTCATAGCTGCTCACAGGAATTCACATTTCCCTTCATTCCTTCACTGACTACCTGACACCAGCCGACCTCTATTCTGTTTGGTGTGTCTACCCAGGAAAGGGTATTTCAAAGCCTGGTTAGTCATTGTGTAATACTTGACTGAGAGGCACCTCTGCATGTATGCACTTAGTGTCCTGTGACTTCAATTAAAGCTATACCTCTAGTATAGTTTACATGTAAAGTTTATTTCTATTTGTTCATGAGTCCTGCGGGTGTTTTAATTCCATTTCAAGACTTAAATCAGACTTTGGGATTTCCTGACTAATCCCAGAGCAGTCTGCTGCAGTTCCATGGGCTTCTCCCCTCTGTCTGGATGGGACAGTTGCAGTCTCTTTCTCTCTCATTGTTTGCTGGCTTTTGTTTTGAGATGAGGCCTCCCTCTATATTGTATCTAGCCTAGGCTGCTCTAGAGCTCATTATGAAGCCTAGGCTGACCTTGAACTCATCATCTTCCTGCCTTAGTCTTTTGACTTCTTAATCAATCTTGGTTTTTTTAAATTATATAAATACTCTTATTTATTTTAGGAACTTAACAAAAGTCCCAAAGGCCAGGGACCTTATCTATTTCTCCCTGTCCTCTTTCTGGGTTCCCTTTCACAGTGAGAGCTCAGTAAGTATTGTTGAGATAAATAAAGGACACTTTTGTACTTGCAGGTTGAGAGACCTCTGCTGCTTATTCTGTCATGGAGACAGACAGACAGATAGACAGACAGTTCTTTCCAGACTCTTAAATTCCAGAAACAAGGAACTTTATTTCTGTATCCCCCTTTCCCCTCCCCCTAGATAGGGTCTCATAGCCAAAGATGGTCTCAGAGACTCTGAGTTGCTGAGGATGACCGCGAACTTCTGGTCTTCCTGCCTTTGCCTCCCTAGAGCTGAGCATAGGTATGTGCTACAGTGCCCAGATTATACAATGTGGGGACCAACCCTGGACTTGGTCCAAAGTAGGTAAGAACTCTGAACTCTGAGCTCATCTTTCCCTTCCACATCGGCCTTTTAAAACAATGAAAGATTTGTTTTTATTTTTAATCATGTATATGTGCTTCTATATGCCCTACACATGAAAACTTGGGTTCCTACAGAGGCCAGAAGAGGAACTCAGATCTCCTAGAACTGGAGTTTTAGGCAGTTGTGGGTTCTAGGAGCTGAAGTTCTCTGGAAGAGCAGTGTACACCTTTAACTGATAAGCTATCTCTCTATGGTCATGTCTGCCTTTTTTTGTTTCGGTATTCTGGTGTCGACCTCTATGGTCCTTGCGCTTGCTAGGCATATGTCTTTTCTCTATTATCTGAGTCTAATTCTTTTTCCAGGCCCCTATGTCCTTGCCTTCTATATGGTATATGACTCTAGACTTATAGGTGGTTGGTGGTTGTTTAGTCTCAGTTGTTGTGTATTGTTGTCTGGTCTTAGCATTTTGTCTGTGTCTTAAGGGCCCTGGGGTTTCTTTCCTCCAATTCCGATAATTTATTAAAAAAATATTATATAATAAAAAAAAAAAAAAGAATGACAGACTAAGATTTTACTTATTTCTGTGTTTTGTTTTGTTTTGTTGAGACAGGGTTTCTCTGTGTATCCGAGGCTGGCCTAGAACTCAGAGATTCACCTGCTTCTGTCAGAGAGCTGGGATTAAAACTGTGCCACCATGATCAGTTAAGCTTTGATTTTAAAGATGTGTTTTCATTTTCAATTATATGTGTGTTCGTGCATGAGTTTGTATAGATGAGTGCAGATGCCCGTAGAGGTCAGAAGAGGGGGTCAGCTGCCCTAGAGTAGTTACAGGTTGTTATGAGCCTTCTGACACCAGAGCTAGGAACCTAACTCAGGTCTATTGCAAGTATGAGCCTTTAACCACTGAGCCATCTTTCCAACCCCTAAGTTTTGATTTTTGTAAAAACAAAGTGGGGTCAGGGTCAAACCTGGCCAAGCACAGCCAGATTACTTCTGAATCTTCAAAGGAAGATTGGGAAATACTCAGGTCAGTGGGCAAGTCCGCCCCTTAGCTCCATCAAAGAATGGTCTTCGCCTGCAGCACTTGCATCCTCAGAAGTCCCCCCCACACTCAGCTCACACTCACACTCAGCACACCCAGTTGGTAAGGGATACGTATCCATAAAGATACTTTAAACAGCGGAGTTCTGAGGGCTAGAGAGATTCCCACGTCTCAGATTACAGAGACTCAGGAGATGGTCCCTTCGTGTTGGGTAGCCCTTTCTCCTAGTGACCTGGACCAGCCGGCCACAGGTGTGAGAAGCAACCTTTACTTGAATTGACCAGGTTGGAGTTGGAATTCTGGGTTACGGAGAATTCCCTTTGGTGGGGAGGACAGGGAACCTCTCAGGCGGATGAGCTGGGTCTGATTGATGGAGAGAGAGACTGGGAGGCTGAATGGTCAGACCTCAGAATAAAAGGCGGAGGGGCTGGCTCAGCAGCTAAGAATACGTATTGCCCGTGCAGAGGACCCAGGCTTGGTTTCTAGCACCCAGACAACAGCTTACAACCATCTGTGGCTCCAGTTCCAGGGGGCCGATGCCCTCTTTTAACCTAAGAAACAGGCATGTACGTGGTACACATACGCACCTTCAGGCAAATCCTCATAAAGTAAAATCTCAGGATGACATCACTGCTCCCGGGGGAGACAGTCTCTCAAGTGACTTAGGGTTTGCAAGAGGTTGACCACAGGGTCCTTGTTTGATGGCTGTTTTCAGTGCACTACAGACCTTTAAAAGACCACTTATACAAAGCAGTAGTTAACTTTCGTAACTGGTTACGGATTATTATTGATGTAAAGACAGAATGCTTGTAGGTTTGCTCATTTGTCTGTCTGTTTTGCCTCCTTGAATGCTTTGGGGAATGAGATTCAGGTTTTCTAGAAAAATCCGCATTTACAGTTAAGAGCACTGGCTGTTCTTCCAGAGGACCTGGGTTCAATTTCCAGCACCCACATGGCAGTTCACAACTATATGTAAATCCAGTTCCAGGGGATCTGACACTTTCACATGGACATACACACACATACAAAACACCAATGCACATGAAATAAAAATAAAATAAATTAAAAAAAATTATTTGTCTTTTGGTTGGAGGGAGTGGTTAAACGCACTTAATTGCTCTTGCTGAAGACCTAAGTTTGGTTCCCAGCACCCACATCAGGTGGCTCACAACCGCTGGTAACTCCAGTTCCAGGGAGTGGGGTATAGCGAGCGGCACACATCTGAAATCTTAGCATTCAGGAGGCGGAGCAGGACCGTTGTAAGTTAGAGACCTGCTTGAACTCCATAGGAAATTGAGGTCCTTTGTGGGAGGAAGCTCAATGGTTGTGCATTTGCTTGGCATACCAAGCCCTGGGGGTAAATCCTAGCGATTTTACATTGTAATAGTTGGCAGTTATTTTTTTCCATGTGTTTCATATCTGAGGTTAGAAGTCATTTATCAAGTTCATGGCCCTAATATTTAAGTTCCAATAGTTCTTGGTATAAATGGGGACAGTTTGCCTCTGAACTGTTCTAATTGCTATTCCAGAGTTCATCCCTATTTCCGTGAGAGGATGAAATAGAGAAGGATTTAGGGAGGAGAGCAGTGAACCCACCCTCTTTTTTTTTTTTTTTTTTTTAAGATTTATTTATTTATTATCTATGAGTACACTGTAGCTGTCTCCAGATGCACCAGAAGAGGGCATCAGATCCCATTACAGATGGTAGTGAGCTACCATGTGGTTGCTGGGATTTTGAACTCAGGACCTTTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCCCTCCAGCCCTGAAACCACCCTCTTGCTCTCTCTTTTTTTTGTGTGTGTTTTTGAGAAATGGTTTCTTTGTGTAACGGCCCTGGCTGTCCTAGAACTTGCTTTGTAGAGCAAGCTGGCCTAGAACTCACAGAGATTGAACTGCCTCTGCCTCCTGAGTGCTGGGATTAGAGGCATGTACCACCAGGCTTAGCTTGAGATAACCCTCTGTTGATAGATACACTGGCCTCATGGAGTTCCATTATCCCAGTTCATGTACTGGTAGATATCAAAGGGAAGGAAAGGGGATTATTAATCTCAAAATTGAGAAATTCCTGTTAATGTTCACACATGGTAGCACACACCTCTGTGCTGCTGAGGCTGAGGCAGGAGGATCATGAATTCAAGGTCAGAGTGGGCTACATAGTGACTTCCAGGCAAGGTCTTTAACCCTTAGGACAATGTTTGTCCCCCGGATCAGCAGCATCAGAACTGTTAAAAATGTAAATTCCGCTCCAGAGCCAATGAGTGAGAAACTTTAACAGTGGGATCAGCCCTTGGGGTCTTAACAAGCCCTGTAGGTGATCTTAATTAAGCACTGGTCTCCTAACCACTATGCCAGGTCTCTGGGTTTTAAATTTGGCAGGTATTGAAATTACCTGGAACCTAGAGTGAGCTAAGAGTGCTAGAAACTGAACCCAGTGATCTCCATATGCTAAGCTTGTGCTCCCCTACTGAATGACACCCTGGTCCTCATCAAAGGCTTTGGAGGCTCCATAGGTGGTTCTGGAATGCAGCTATCGGGCAATGCTGCTGTTTTACTCAAAGGGTAGGCTCTGGAGCACTGGCACTAATCTCAGCAGAAAGCTGAGGAGAAATGCACAAAAGTACACGGTTAATTAGATCTCTAGGTGGCTCCTCTGCACCTTGGAGAATGAGAAGCCTATCCTGTATTAGAGAGGAACGGGCTATTACATTCATACCTGTTCTTGTCCTACAGTTGAGCCAAAGAATTACAGCTTCGCTGTCCAGCTGTCTTTAGTATTTTCCAATGTTCAGTGGTAACAGCCAACAGGTTATCTATTTGAGGTTTGCTGTATAGCTAACTGTTCCTCAATGACTGTAAACACCTATGTACAGTTCCCCTCCTCTCCCTCTCCCCCTCCCTCTTCCTCTCCCTCTGTGTGTGTATAGGCACACATTCTGTAGTGCACATGTGAAAAGCTTTCGGGAGTTGTTTCTCTTTCTCCTATGTGGGCAGGTTCTGGGCAGTGAAATCAGGTCATCAGGCTTGGTGAAAAGCCGCTACCTGCTGAGCCATCCTGGTGTCTCCTGCATGGGTGTCTTTGAGTGGTGGAGGGGGCTCCAGTGAAAATGGAGGGGACATGGTGTGGGCATCAAATCAGTATCTGATCACTGTTTTAGACCAGTGGTTGCAACCACAGTGTTGAAACATAGTGTGTTATAGTCAATTGGAAGGACTGAGCCAACTCAAGCTTCTGACTATAAGTAAATTATAGGTCATCCCTTATTACAGGTGATTCAATCTAAGACACACTCCACTCTGCATTCCTAAAACCCGCTGTATAGCACTTCCCATGTACCTTCACAATGATAACCATTATTTTATAAATTATACACAGTAAGAGACAGTAAAGGCTACAATAGAAAAATAACAGTATGTTAGACTGCAAAGTTATTTAGCCACGTGTGATGGTGCACGCCTTTATTCAAACACTTGGGAGGCAGAGGCAGGCAGACCTCTATGAGTTCAAGCCCACCCTGGTCTACATAAAGAGTTCCAGGACAGCCAGGGCTATGTAGAGAGACTCAGTCTCAAAATTTAATTAATTAATTAATTAATTAATTATGAGTTCTGGAGTTTTCATGTAATTTTTTTTTGGACGTTGGTTGACTTGGTGACTGAAACTTTGGGAATAGAAACAGGAGATAAGGGGGGACTATTCGAGACCAATTGAAGTTTATGCCCCATCTTTACCATCAGTTTTTTTCACTCATCCTGAAATGCTTTCTGTTGTAGGAGAGAAAGGGCCCACAGCTAGGCTGGAAATGCACAGGTCCTCAGGACAGCCATAGGCCTGCTGTGTACCCGAGCCTTCCAAGTTCTGGGAATTAAAGGCTCTGTAGTCTCACCTTTTAAATGAGACTGAGCTTTAGAAACATTTCTGTGATACCAATTAAAAAAAAAACTTCGTTCACCCATATGTCAGATTCATTGATGACATATGACATATGTCCAAGCTCTAGACATCACGGTGACTGCTAGGGCCATTGTGTACCTTGTCACTGCCCTTTAGTTGGGGTACTTTCAGATCCCTACCTGATCTGATTTGCTCATGCAGAAGTGAGTGGAGACATAGAACTCCAATCTAAGATTAGAGATCTCAGTGACTGCCACAGAGGAGTCCTGGCAACTAAATAGTCAGTCAGGAGGAAACTAACTTGAATCCTTGTGGGCTTTTGTTGTTTGTTGGAAGTGGAACCCTTTAATTTTGTTGGTTTCTTTTTCTCATCACAATGGGGAACTGAGCAGACATTGTATGTTTTCTTCCTTTCAG
Seq C2 exon
ATTTTGAGATACAGAGTGAGAATGGGGAGAACTCAAATCAAGACGTGTTTGAGGATGTGGAATCACACGAGACGTTCTTGAAAATCCCTGGAGGGGAGGGTGGTCAGCAGTCGGATGGGGAGAGTGACTTTGAGAGAGACTGTGGCTCAGGAGGCGCCCAGGGAAATGTCCCAGGTGAGGAGCACAGGGACCTGCCATCGGAAGGAAGGGAAGTTGGCCAGCTAATAGGCCTTCAGGGCACCTACCTGGGTGAGAAGCCTTATGAGTGTCCCCAGTGTGGGAAAACTTTCAGCCGGAAGTCCCACCTCATCACCCATGAACGGACGCACACAGGAGAGAAGTACTACAAATGTGAGGAGTGTGGGAAGAGCTTTAGTGACGGCTCGAACTTCAGTAGACACCAAACGACTCACACCGGAGAGAAACCGTACAAATGCCGGGACTGTGGGAAGAGCTTTAGCCGGAGCGCGAACCTTATCACGCACCAGAGGATCCACACAGGCGAGAAGCCTTTCCAGTGTGCCGAGTGTGGCAAGAGCTTCAGCCGGAGCCCCAACCTCATCGCTCATCAGCGCACGCACACAGGTGAAAAACCGTACTCATGCCCTGAGTGTGGGAAGAGCTTTGGCAACCGATCCAGCCTTAATACTCACCAGGGAATTCACACTGGAGAAAAACCCTATGCGTGTAAGGAATGTGGCGAAAGCTTCAGTTACAACTCCAACCTGATCAGACACCAGAGGATCCACACGGGAGAGAAACCATACAAATGTACCGAGTGCGGACAGAAGTTCAGCCAGAGCTCAGCGCTCATTACCCACCGAAGAACACACACGGGGGAGAAGCCGTATCAGTGCAGCGAGTGCGGCAAAAGCTTCAGCCGCAGCTCCAATCTGGCCACTCACCGGCGAACCCACCTGGTGGAGAAGCCCTACAAGTGTGGGGTGTGTGGCAAGAGCTTCAGCCAGAGCTCCAGCCTGATCGCACACCAGGGCATGCACACGGGGGAGAAGCCCTATGAGTGCCTTACGTGCGGAGAGAGCTTCAGCTGGAGCTCCAACCTCATCAAGCACCAGAGGATCCACACCGGGGAGAAGCCATACAAATGCGGCGACTGTGGGAAATGCTTCAGCCAGCGCTCGCAGCTGGTAGTGCACCAGCGGACTCACACGGGGGAGAAGCCCTACCAGTGCCTCATGTGTGGGAAGAGCTTCAGCCGGGGTTCCATTCTGGTAATGCACCAGCGCGCGCACTTGGGAGAGAAGCCTTACAGGTGCCCCGAGTGTGGGAAAGGCTTCAGTTGGAACTCAGTTCTCATCATACACCAGCGGATTCATACGGGAGAGAAGCCCTACAAGTGCCCCGAGTGTGGCAAAGGCTTCAGCAATAGCTCCAACTTTATCACGCACCAGAGGACTCACCTGAAAGAGAAACTTTACTGAAGCGGCTGTAGAGAGAAGGGAAGTGCGGAGCCGAGCTGACTCTGAAGGGAGAATTCCCACAGTGCCCCCCCCCCAATGTTGTCCCTTTCAAAGAACCAGTTTTCCTAAATACTCTTTGTGAGTTTTTGCCAGAACCATGCCCTGTTTCTTCTCATTTCTAGGACACTGTAATCTTGTTAGAGTCCTGTGCAGCTGGAGAAGGGAGTCTAGGAGTGCAAGGTTGGAAGTCCGGTCTTGTCTATTACATTTCATGATTTGATTCCTCTCCTCCCTTTAAATTCCTCTGTGCTTCTGTTCTCTTGAAATGGGAAATACTTCTCATATGTGATGGCAGTTTGGTCCACAGCCTAGGTTGAGCCCGCAAAGAAATACTGAACATTATTTGTGTGGCCCTGAATGCTTTGCTGTCACGTTGTCCGGCTAAGGTGCCTTTGCCCACAGCTGCTAGCATCCCAGGCTTCTCTCCCCCATTTTAGACTGCACCTTGATGACTTGTGTCAGGTCAGGATGACAGATCTTCTTCAGCTCCGAGTCCTCTGTAGGAAGGCAAAGCCTTTCCTGGTTTCAAAACAGTGTGGGAAGTATGGCCTGGGACTGATGTCTCTTCCGATGGTAAGAGAGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022164:ENSRNOT00000034267:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.822 A=NA C2=0.244
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(95.6=63.7)
A:
NA
C2:
PF0202312=SCAN=PD(3.3=0.6),PF127602=Zn_Tnp_IS1595=WD(100=9.6),PF0009621=zf-C2H2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.0),PF097235=Zn-ribbon_8=WD(100=8.5),PF134651=zf-H2C2_2=WD(100=5.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]