HsaEX0073838 @ hg38
Exon Skipping
Gene
ENSG00000197363 | ZNF517
Description
zinc finger protein 517 [Source:HGNC Symbol;Acc:HGNC:27984]
Coordinates
chr8:144802870-144804238:+
Coord C1 exon
chr8:144802870-144802947
Coord A exon
chr8:144803641-144803767
Coord C2 exon
chr8:144804125-144804238
Length
127 bp
Sequences
Splice sites
3' ss Seq
AGCAGAGTATGTGGTTGCAGGAG
3' ss Score
0.06
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
Exon sequences
Seq C1 exon
AATTCACTGTCTGTAGCATCTGCTCCTCCACAGAGGGACCCTGGAATGGCGATGGCACTCCCGATGCCTGGACCTCAG
Seq A exon
GAGGCGGTTGTGTTCGAGGATGTGGCTGTGTACTTCACAAGGATAGAGTGGAGTTGCCTGGCCCCCGACCAGCAGGCACTCTACAGGGACGTGATGCTGGAGAACTATGGGAACCTGGCCTCACTAG
Seq C2 exon
GCTTTCTTGTTGCCAAACCAGCACTGATCTCCCTATTGGAGCAAGGAGAGGAGCCGGGGGCCTTGATTCTGCAGGTGGCTGAACAGAGCGTGGCCAAAGCCAGCCTGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197363_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.119 A=0.000 C2=0.086
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACTGTCTGTAGCATCTGC
R:
CTGTGCACAGGCTGGCTTT
Band lengths:
190-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development