HsaEX0073838 @ hg19
Exon Skipping
Gene
ENSG00000197363 | ZNF517
Description
zinc finger protein 517 [Source:HGNC Symbol;Acc:27984]
Coordinates
chr8:146028255-146029623:+
Coord C1 exon
chr8:146028255-146028332
Coord A exon
chr8:146029026-146029152
Coord C2 exon
chr8:146029510-146029623
Length
127 bp
Sequences
Splice sites
3' ss Seq
AGCAGAGTATGTGGTTGCAGGAG
3' ss Score
0.06
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
Exon sequences
Seq C1 exon
AATTCACTGTCTGTAGCATCTGCTCCTCCACAGAGGGACCCTGGAATGGCGATGGCACTCCCGATGCCTGGACCTCAG
Seq A exon
GAGGCGGTTGTGTTCGAGGATGTGGCTGTGTACTTCACAAGGATAGAGTGGAGTTGCCTGGCCCCCGACCAGCAGGCACTCTACAGGGACGTGATGCTGGAGAACTATGGGAACCTGGCCTCACTAG
Seq C2 exon
GCTTTCTTGTTGCCAAACCAGCACTGATCTCCCTATTGGAGCAAGGAGAGGAGCCGGGGGCCTTGATTCTGCAGGTGGCTGAACAGAGCGTGGCCAAAGCCAGCCTGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197363_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACTGTCTGTAGCATCTGC
R:
CTGTGCACAGGCTGGCTTT
Band lengths:
190-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)