Special

MmuINT0179012 @ mm9

Intron Retention

Gene
ENSMUSG00000017667 | Zfp334
Description
zinc finger protein 334 [Source:MGI Symbol;Acc:MGI:2388656]
Coordinates
chr2:165208739-165212488:-
Coord C1 exon
chr2:165212426-165212488
Coord A exon
chr2:165208866-165212425
Coord C2 exon
chr2:165208739-165208865
Length
3560 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GATGGAACTTGCTCTTTCAGAGA
3' ss Score
7.12
Exon sequences
Seq C1 exon
CCCTTGGATCACCGGTGGTTCCTGGCCCTTTCTTGAGAACGCCTGGAAATGGACAGTACCCAG
Seq A exon
GTAAGTCACCGAGGGATTCACGTCCCACCGTTGGCAGTGGCTGTTCATAGACCCGCAGCGAGTACATCTGGATGTGGTAGACGTGTATAAAAAGGCAGCGCCAGGGAAAGTAAGGGAAGCAGATCAGTACCAGAGAAGTGAACCCCAATAAACAGAAGGCATTGCCAGATGTGCTGGAGCACGCCTTTAATCCCAGCGCTTGGGAGGCAGAGGCAGATGGATCTCTGAGTGAGAAGCCAGCCTGGTCTGCATAGAGAGTTCCAGGACAGCCAGGGCTACACAAAGAACCCTGTCTTGAAAAAAACAATAAACAAACGGATAAATAATAAACAGAAATTATTCACCCCGGTAGGCTTGTTTAGGTTGTATGACAAAGACCCAAGTAGTAGGAAGTAGGCTGTTACCATGGTTTTTCATCATTTATTTATAAACATGTTCTTAGAGAATCTATGAGCAGATGATGCGAAATCACCTTTGCCAACAGCAGCTGTAGATTCCCTTGACTTACAGCTTGGCAAGGCCTCATAGTTACAGATGTCTAATCTATTTTCAGAGGTGTAGACAGCCCTCTGATCGTTCTCCATAGTGTAATGATAAAACCTGCACTCAGTGGGTTACGTGTGCCTCAAATGGTGCCTGTTGCTGCTCCTTTTTATCTCTGGTGCCTTTTTAGAAAGTGTGTGTGTGTGTGACTGTAAAGAGGAGACAGGCTCACGCTGATAATTCTCCTTCTGCCTACTGAGTATTTCAGCTCTGCTTTTAAAACAGGCAGCTCGGGGCACACTTTGACTTTAGATCCTGTGATAAAACTATTTCACTTGCTTCTCTAATGTCAACTCACTCCATGTCCACGACCCGTGTTGTGACCAAAATCAGTGATCATTCGCTTATTTTCAGACTTAGTATTTCTACTCCGTGCTTCACCAAACCCCTTGCCCTTACAGTGTGACTGTCTCTCCCCAGACCGTACCTCTAACCATGTCTAGCTTTCACACCACTCTCTAACTCGCTAATTGTTTCCTCTCTTAGACCCACTGCACCTGCCTCTGCCACCGACATTGTGTGCTTATTCCAGTCTTCTCTCTGCTTTCCTCTGTGTCATCTAGAGTTTTAACTGGAACCCTCTCACCGCTGAAATCTTCCTTCCTGTCAGACTCTCAGGGTGAATTCTCTTGCTGTACTTCTCTGCAAGCGGTCTGCAGAAGGCTCTTGGAGTTCTCCGGTGCAGAACAGAAATAATGTCCCCACCTCTGTTCAGTGTGCAGCCACCTCACTGTTCTCTGCCGACGCTGCTAAGCCTTCCACAAGCTAGAAAGAAAATAAGCCAGGTGTGGTGACTGAGGCCTACAGCTCCAGGACTCAGGGAGCTAAGGCAGGAGAATTGCCATGAGTTGAGGCCAACCTGGGCTACATTGTGAAACTGTCTCAAAAGTGGGGAGGGGGAGAAGAAGAAAACGAGGTGTGTGTCTGGTCCTCCTGTTCCTTGTTTCCTGTCACAGGCAGTTGTCAAGCCTTGTGAAGGTCTCATGCGAGTCAGTCCCTACCTCCCTTCTAGGCCTGCTTCCCCGACCTCAGTTCCTGTCTTTGGGATTGTCAGAGATTTCCCCATGGTCTATCCACATCTTTCTCAAGTGTGTTGTTCACACTTGCCTGTCTTGCTAGCAATACCCATCTGTAACGTCTCGATGCCACACTGCCCGAGCAGGTCCACACTAGTACAAGATGAAAGTCCAGCATTCTTGGTTTGACTTAACAAGGCCAGGTACTTCCTGGCCTTTTCCTGCTTTTCTTTCATTCCTGCCACTCCAGACTTTTCGTTTAACAGCTGCGTGTTGATCACTGTGTTGTGTGTACCGGATGCTGCACCTGCGGCTTGGCAAAAGCCAGCACCTCTGCGCTCATGGAGATGGAGCTGGTGGAGGACTGGCTTTCCTGTCCAGCCAGGTGTGGTGCTGTTTGTGTGATTTGTGGTTCTCCTCCATAGCGTGTGCCTGTTGGCTGCTTGGGTTTGGGGAGTTGAGAAGCATCACAGTGGAATCAGGCGAGTCCACAGACATCTGTGGGGAAGTGCCTGCCCTCAGGGTTGCGTTTTCTCCTGGCTGTTACTCTCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTTCCTCCCTTCTCCTGTCCTCCTCCTGAAGGTGACAAGTTCACTCATCCCTCATGGCCCTTTCTGTGTTTTACACGGATATTGTTACTATGTGATCTCTCTCCTCTCCTTTCTTACATAACGTTACACGGTAGCTATCGCTGCGCCTCTTCCCCCTCACGGTGCCGCCTAGAGCTCATTCCGTGTCAGTCTAGAGACGGTAGCGTTTTGCCTTCAGATACTGTTCCCATAACCAGTCTCCTCCATGAGCTCCAAAACCTGCTGTCACCTGCCAGGGTCGGTGCCTTTAGACTCTTCTCGTCCCTCACCCACTGAAGCGCCCTGTGGAAGGGCATCCTGATCGTCTTCCCCTTTGATTGGACCTTTTAGCTGTTTCCCATGTTTCCATATAGGGAGCAGCAAGCCTTTTCTGGGGGACCGTATGCCAGCTGTTTTCAGTTTTGCTTGGACACATGATCTCTGTTAGCTCTAAATGCAGCAGTTTGCAGAATGGAAAAGGTCACGGACAAAGTGTGAACCAGGCACTGACCAGACTGAGCCACCGAGGCAAGATGGACCCAGAGGCAGTGGCTTGCCACCACCCACACACGAGTGTCACCTCCAGAATGCACATTGTCCTGATGCTCTAGGGGTTACAGGCCCCTCTGTGTTCTCCAGAGTGGACGGTGGGGTGCATTCTGGCAGCCCCTGGGGTCATCGTCATGTTCATCTCTTGGCCAGAAGCATAAGCAAACGATGACGTGTTCCTGGCGTCTACATGGTTATTGGCATTCACATACTGCTTATCCTGGAGTTACAGTATGGCTTCCACACTAGGTCGTCTGTACATTGAAAGAGTGTTTCCTGATGCGTTGCAGTAGCAGAAACCTATATGACTGACTGGAAGCTCAAGGGCCTCTGTCTCTGCCTGCCCCCTGGTTTCTTTCCTACAAAGGTCACTCTTCAACTGTCATGTGTGTGTGTATGTGTGTGTGTGTTGTGTGTATGTGTTTGTGTGTATGTGTGTGTGTGTGTGTGTATATGTGTGTGTGTGTGTGTGTGCTTCCTAAGTGTATTTCTCAGTGAACACGCTGTGGCAAGATGTACTTTCTGTGAGGACTAAAATCATCAACTCGCAGAAGTCTCCCTTTGTCCAGCATGTATGTTCCTGCCTGAGGTGCAGTCCTGCGTGTGTCACCTGTCCTACTGGGTGCTCCTTCAGAGCAAGAGCAAGTCAGTAATCCAGGAGTCCCAGGACACGGTATAAGCCTGCACATTTAAAGCACTCATTCACATTTAAGTTAGCCATTTCTTCTTTTCTTGCCCGAAGCATCTCTCTGGCAGACACTGGCCATGTGGGGCCCACCTCATGTTTCTTATTCTTCCTCATCGCTGTTGCTCAGGTCCAGTATCTCAGATGGAACTTGCTCTTTCAG
Seq C2 exon
AGATCAATCTCCTTCAAGGACTTGGCTGTGGACTTCACCCGCGAGGAGTGGCAACGTCTGGGCCCTGCGCAGCGTCTCCTCTACAGGGATGTGATGCTGGAGACCTACAGTAACCTCATCGCGGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017667-Zfp334:NM_178411:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion (1st CDS intron)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
PF0135222=KRAB=WD(100=95.3)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000099373





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr20:46504741-46512081 
ALTERNATIVE
HsaINT0186911
(ZNF334)
Human
(hg19)
chr20:45133380-45140720 
ALTERNATIVE
HsaINT0186911
(ZNF334)
Rat
(rn6)
chr3:162060755-162066255 
Cow
(bosTau6)
chr25:39055689-39055699 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
chrUn_random:54591509-54591752 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"