HsaINT0186911 @ hg38
Intron Retention
Gene
ENSG00000198185 | ZNF334
Description
zinc finger protein 334 [Source:HGNC Symbol;Acc:HGNC:15806]
Coordinates
chr20:46504614-46512140:-
Coord C1 exon
chr20:46512082-46512140
Coord A exon
chr20:46504741-46512081
Coord C2 exon
chr20:46504614-46504740
Length
7341 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GATTAAACATTTTCTTTCAGATA
3' ss Score
8.03
Exon sequences
Seq C1 exon
CTCTGCTTTCAACACTCTTGGCCCTTTCTCAAGAGAACATGAAAATGAAAAAATTTCAG
Seq A exon
GTAAGTTGCTCAGGGATTTACTTCTCACATTATACAGTGAATTTCAAGAGGTTTAGAGTAGTTTGCAGATGAAACGAAATGTATAAAATTCAGCATCAGAGAAGAGTATTCGATCAATACTGGAAAAGTGGACATAGATATACAGAAATCATATATTCCTATAGAGTTACTCAAATGGTTCCAGAAAGGCCCAGACAATATGAGATAGCCCTTACACTGGATTTTTGTGTGGTTTTCCCATCATTTATATCTAAAAATTTTCTTGGATGATCTTTGAGTAAGTGAAGTAGAGACAGTTCTGCCAAAAACAGCTGAGAAAGAAATGGTATGGGTTTCCTGTGACTTCTATACCCAGGCAGAGCACAGTAATTACAGGGAACCAATCCAGTGTCATCCGAACAGGCAGCATTCTGATGGTTCTCTGTGATGTCTATGATCCAGTGATAAGACCTAGAATAAATGGATAAAACCTATAACAAATAAAATAGTGTTCCTCAAATAATGCCCCATAACTTTATTTCAGCTATACTTATAAAACAAGTTCTAGAGGGAACAATTCAATATTATATTCTGTAGGTAAAACTTCTTCATGTGCCTGTCTCATTTCAACCCACTTGATACAGTCTGGTGTCTGCCCCCACCACTCTGATGGATCTGTTCTGGAAAAATTTAGCAGTAACCTAAATATTTTCAAACCCAATGAGTATCTTTCAGTTCATACTTTACCAAACTCTTTGTTGCATTTGACAGTATGACTGCCCCCTCCCTAATAGGCACCTCTGATAATGTCTGTGGTATCACTCACATGATTCTCTTTGTAGCTCTGTAATCATGTCTTTTTTTTTTTTTTTTAATTGAGATGAGGTCTCACTATGTTGCCCAGGCTGGTCTCGAACTCCTGGGTTCAAGTGATCCTCCCACCTTGGCCTCCCAAAGTGCACTGATTACAGCTGTGAGCTGCCACACCCAGCTTGTAATCATGTCTTCTTTATATCTTTTATACAATCTTTTGTTTCATGAACATTGCTATGCCATTGTTAGCCCATTATTCTTTCTGATTTTTTTTCATGCCCTTTGTGGTTTTAACTTGTGAGTCTTTATGCTCTGAGGTATTTCTGCCTCTGAGGACCTCAGCTTGAGATTCTTGCTGAACATCTCTGTAAGGATGTCCAGAAGGCACATGGAGTCCTCATATCCAACATGGAAATAATACTTACAACTTGCTCAATGTGCTGCTGCTTCTTTTTTCCCTATCAGTGCTGCTTCCATCTGACCAGCGAGACAAGCCAGAAAATGAAGGCCATCTTTTTTTTTTTTTTTTTTTGAAATGGGCTCTCACTCTATCACCCAGGCTGGAGTGCAGTGGCACGATCTCAGCTCACTGCAAACTCTGCCTCCCGGGTTCACACCATTCTCCTGCCTCAGCCTCCCAGGTTCACACCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACCCGCCACCACGCCTGGCTAATTTTTTGTATTTTTTAGTAGAGACGGGGTTTCGCCATGTTAGCCAGGATGGTCTCAATCTCCTGACCTCGTGATCCTCCTGCCTCGGCCTCACTAAGTGCTGGGATTACAGGCGTGAGCCATCGCGCCCGGCCTGAAGTCCATCTTAATTCTCCTTTTCCTCACGTCCTACCATACCTGTTTGTCGAGCTTGCTAATGTTGTCACATAAACATTTCTTGAATTTGTCCTTTCACTTCCATCTCCTCCTCTCCTGCCTCAGTTTCTCGTGGGTTGTCATAATATTAGTAGCTTTCTCAGCAGTCTGCTTGGCCCCTTCCTCTTCCCACCTCAAGGCTGTTCTTCACACTGACCAATTCCTCCAAAATGCCAACGTGATCATGTCTTAATACAGAAATGACTTAAGAGGTTCCACGCCACTTGCAGAATACAAGTTCAGCATCCTTGGTATGACCTGTAAGGCTATGTATGTCATGACCGTTTCCTGCCTCTTCTCAGTTCCTACCACTCTGGACCTTTCATTCAACAACTGTATATTGATCAAACAATTGTGTGTGATACGCTATGCTAGATGGTCTACATTCAGCTTGAATGAAGGAGATACTGTCTCTGTCCTCATGGAGCTCATGTGCTAGTGAAAGAGAAAGATATTACACAAGCAATTCAAACTGTGCTGAGGTGGTTCTCAACTCTGCCAGACCCATATCTTTTTACAGAACATACTTTCTTAGGAGCTATATTGGGATGCAAACCTTCCATATTCTGCCATCCCCTTTATCTCTCTTAGTTAATGCCACCCACCCACACCAGGCTGCCTCCTGTTTTAGACTTGGATGAAACCACACACCATGAGGTGTGGTACCAGCTTCCTGAGGGGCCAGATGGTGGAGCCAGATGATGCAACCTGGAAGTGTGCGCAAGTTAACTCACCGTGGGTGAACCTTGAATGAAGGGAAATGGAAAATGAGAAGGAGGTGGGCAGATGAATTCCCCATCCTTTCTCTATTCTGTGCACTATTTCAAGGTTAGTTTCTCCTGGTGGTCCTCCCAGAGATGTCCCATGTGCTGACCCACGTGCTGACCCCATGCTCCTGCTGAGGAAACTTGCCCCTCTTTGGGGCTTGTAGTGAGTTGGTGGGCAGCATGCTAATGCCTCTCATATCTCATTGTTTACATCCTTTCTTTCCTCCCTTCCTTACTTCCCTCACCCTCACTACCCCGGCTTGGAGTTCCCAGATGGAATGATGCAGACCAAGTCCTTGCCTTAGGATCTGTTTTCTAGAAATCCCAACTAAAAGCCATCCTCCCTTTATCCTATTTTGGAGATCATAGATAATACAACTTACTTGTGTAATTTTTAAAAAAATCAATAGAACTCGAATATAGAGGAAAAATAAAAAAGTAATTAAAAATGATATGTATCTTAATATAGACTTGCCCAGATAAAACTATAGTAAAAGAAGAGGAGTCTGGTGTTTATACAGATTACTTTTAGGTTAAATTTCTATGAACGTGATAATTACAAGTTCTCACTGATATGGGACTGATGTGTCATGATTCAAATACTGTACATAGCATTGCCATTTGTGATATTTTTCAAGAGTGAAAATCCCTGAAGTTCCAGTTCAAATCAAATACAAATTGTGCTTGATGTATCCACTATTACATTGAAGAAAATTTAATATACATAAAAAATATATAAAAATACTATGTGTTCAAGTGCCAAATGGAATAAGGTTCTAGGCTCAGATCATTATAAACAGGATTTTTCGTTTATATGAATATTTAAGATTAGAAAGTTATACAGGACTTGGGACATTTCTTTCCTGTAGGAGAAGGTCCTGCATGTTGCAGTGTCTCTACCATCCTTCCTTCCCTCTCCTTCCACCAAATGCCAACAGCATCCCACAGAACCCTGACAGGCAAAAATGTCTCCGCAGATGTGCCACATGCCCCTGATGGAAGGGACCACCCACATTGAGCCCCTCTGAAGAACGATGGTGGTCTGCATTTAGTCTCCTGAACATGCCCCAAATTTTACACTCTTGCTTTTAACCGTGTTTCTACTGTTTGCTCCTTGACTTTCTACCCCTTTTCTGCCTACATTGTGAACATAGCCAGGAGCCATCTCGTCACAGGACCCATTCCTGTCCTCATATTCTTTGTCCACAGACTATGTGTTTACAGAGCAATGCTGGCCCTCTTCTTTGCATTACATGTAGGGTCTGGTCATTATCTGTCTACCTCACAAGTAAGACTATTAGCCTTTAAAGGTGTAGGCACATGTCCTCAGTAGCCATATCCCTGCTCATAGTAGTACTCATCATTTCTTTTTTTGGGTAATCTTGTTTTGTGTGAAATGGTGAACTCTCCTCTGCTCTGAATGGATCATCATTCTACTTACAGTATTGCTTGCAGAATGGACCTGAGTCACCGGGAGAATCGAGTTTCTTTTTCTTTTGTCATAAGCACCTTTCAGTTTCTCACAAAGTGAACACATTTCACTGTTCTTACTTTGGACTTTCTGCTATGAAGTGCACTGGGTCTGCCTGAGCAAGTACAGAACTTTCTAGTGAGGGCTCTTCCCTGGCACTCTTTCTCCCTGGCGTTTTGTTTCTAATATTTTTGCCAGTCATTCTTTCTAGTCATTAAGACCTTATATGTCTATTGTTGTGCCTATAATTATGAGATACTCTTTATCTTCAGGAAGCTTATAGGTCCTTCAGAGGAAGTAATTCATGGAAGAAATAAAATGGATAATGTAACTACTTCTGGTTTAAGAGACAGTTAAGTGGTGATAGCGGGAAAGGCCTCATTAAATTACCTAATAAAATTTGTCAGTAGAAAGATGTATAGCAGATCAAAGAAAAGAAAGACGGGTGACCTAGGATGGTCATGTGGGTGAGGTGAGACATACAGCAGGCCAAAGCCCAGGTGTCTGCAGAGGTGGAGGCAGCATGCCTATTTTTTACTGCTTTATTTTTAAATACGAAGAATGAGAAAAATCATACACAAAATACCTGTGTTTCCTTCACCTCGCTTCCCCTGATCTTTCAAAACTATATTATAGTGATCAGAACCAGGAAATTCACATGAATACAGTATTATTATCTATCGTATTCAAATTCTGCTTATTATTTTCCATAATATCCTTTTTCAGTTCAAGGATCCAACCTAGGAACCCAGGTTGTGTTAAATGTCCTGTCTCCTTAGCCTCTTGCAACCCACGATGGTCCTTCTTTGTCACTTACAACCTTGACACTTTGCTGGCTAGTTATTTTGCAGGGTTCATCCTAGCCTTTTCTTTATTTCCTTTCCCCTTCCCCTTCCCTTTCCCTTGTTTTTCCTTTGTTTTCTTTTCCTTGTCTTTCCTCCCTCCCTTCATTTCTCCTTTCTTTTCCTTTCCTCTTTCTTTTCTTTCTTTCCTTTTTACTTACTTAAGCTTATTTAACTTACTTAATTTTTGAAACTGGGTTTTGCTCTGTTACCCAGGCTGGAGTGCAGTGGTGCAATCATAGCTCACTAAAGTCTTGACCTCCTCAGCTCAAGCAATCCTCCTGCCTTAGCCTTCCAAGTAGCTGGGACTACAGGCATGTGCCACCACTCCTGGCAAAAAAAAAAAAATTTTTTTGAGAGATGGGGTCTCACTATGTTGCCTAGGCTGGTCTTGAACTCCTGAGTTCAAGCGATCCTCCCACCTCAGCCTCCCGAAGTGCTGTGATTACAGGCATGAGGCACCACGCCTGGCCTACCATAGTTCTAAGAATCAAAACCGTATAGAAAGATATTTTAGAGAAGTGTCACTCCTTCTCATCTCTTCTACTCTGTTCCCATCCGTCCATTCTTTCCGTCTGTCTCCACCTCTCCCCTGAATGTAACCAGTTTCATGAGTTTCTGGTGTATCCTTTCCATAATTTTTTTTCACATGTAGTGGTTACATGTGGGTTTTTTTGTTTTTTTGAGATGAGGTCTTGCACTGTCACCCAGGCTGCTGGAGTACAGTGGCACAATCTGAGCTCACTGCAACCTCTGACTCCCAGACTCAAGTGATCCTCTTGCCTCAGCCACCCGAGTAGCACATGCCACCATGCCTGGCTAATTTTTTTTTATTTTTTTGTAGAGATGGGGTTTTGCCGTGTTGCCCAGACTGATCTTGAGCTTCTGAGCTCCAGCGATCAGCCTACCTCAACCTCTCAGAGTGCTGGGATTATAGGTGTGCGCCACCACACCTGGCCATGTGTGTTTTCTTACATCTCCTTTCTTACATAAAAGGTAATATATTATAGATATTCTTTAATACTTTGCTTTTTTCACTTCATATCAGTTCATGGAGACCTTCCTCATTATTTATGCTTTCAAATATTGCTTCTGATCACTGTGGTATCTCTCCTGTGAGCTCCAGAACCATATATCAAACTGCCAGCTAGATATCTGTACTTCTTTACTCAACAGACACTTCAAGCACAGCATGGTAAAGATCAGTGCCTTCATTTCCTATGCTCGATTCTCTTTTTTGTTTTGTTTTCCTAATCTCCACATATACTACTAGCGTCAGCCCAGCTGATCATGTGAAATAATATGCACATTACATCTACTGCACATCAAGTAGTGGTCAACTCTCCTTGCCTCCCGTTATGTAGGACTGATTCTCTCCTTCCCATTTCCCAGGAACTACCTGTGCTCATGTCCTGTAGTAGTGTCTTAGTTTTCTTCCCTTCTAATTTGACCTTTAAGCCAGTTTCCATTTTTCTAGAGTAGGGGACAGCAAATGTTTTCTTTAGAGGACAAGGTCAAAATTTTTGGCTTTGCTGGCCCTGTGGTCTCTGTTGGATTTCCTTGGCACAGCTGTTGTGACATGAAAGCAGTCATAGACTGTGTGTAACAAATGAGCGTGACCACGTTTGGCTCCCAGTGGCCTAGATTTTGCCCACGGACTGAAGTTTGCCAACTCTTATGCTCTAGAGCATTGTTTCAAAATACACATTTGGTCACAAATCTCCAGTCCTTGCTTACAAATAACTCTTTATGGATTTCCATTATTTATAACAGTGATCTCCAAAGTGGAGGATAGGGAGCACCCCAGCAATTCACTGGACTTCTATTCTTGTATTTCAGCCAAAAGAATGAAAAAATAATTAAGCTTTATTGATATTAGTGTATAGCTGGAACTCACTTGGAAATATACTACAATTCCTAAGTAAATGTACGTTAGCGTATATGCAAGAATGTTTTACTGATGTGCCGTACTATCTAAATTTCAAGACTACTAATTAGAGAAAAGAGTTCCTCTATTCTCTGACCTCTGTCCCGCTCCTCACTAACCTTTCCTGTGGAGAGATTGTAGTTCTCGAACTCCCCATATGTGTTTTGTGTCTGTGTATATTCTTAATGGCTACAGTCCTATAAAACATACTGTTTATATTTCAGGACTAAAATTATTATGCTCTCAAGGAAGGGGTAACAAAAATGGAGCAAGCTTTCTTCTTTTGTGATCACCCTTCATCTTGTGTATATGTCCAGCATTGCTCTTTAAAGATGTACATTTCTATTTTTGTCACCCTGTCAGAATGTATGCTCCTAAAGAGTAAGATTAGTATTTTATGTGATTAGTAATCCAGGCAATTGGAATAGCTCCAGGACATGGTATAAGCTCAGCACATTTTTAAAATTCATTTTAAAAAATGAACACAGTGACAGATTTTTAATTTTCTGCCCTCCCACAATTACATCTCTCTATAGCTTTCCATTAGCCATGGCAGTGGTCTTCTTATAGTTTATGTTACCATACATTTGATATCACTCAATTTTGGTCACCCAAGATTAAACATTTTCTTTCAG
Seq C2 exon
ATACCAGTTTCATTCCAGGACCTGACTGTGAACTTCACCCAAGAGGAATGGCAGCAACTGGACCCTGCTCAGAGGCTCCTGTACAGGGATGTGATGCTGGAGAACTACAGCAACTTGGTCTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198185:ENST00000347606:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains