HsaEX0073445 @ hg38
Exon Skipping
Gene
ENSG00000198185 | ZNF334
Description
zinc finger protein 334 [Source:HGNC Symbol;Acc:HGNC:15806]
Coordinates
chr20:46504614-46513559:-
Coord C1 exon
chr20:46512540-46513559
Coord A exon
chr20:46512082-46512140
Coord C2 exon
chr20:46504614-46504740
Length
59 bp
Sequences
Splice sites
3' ss Seq
CGCCATTCTTCCTTACCCAGCTC
3' ss Score
5.96
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GAGAGTCCTGGGTTGGAGGGAAGGAGTACTGGTTATAAATAAGGAAATGATGTCTTCATCACTTCCTAAACACATACATGTCATTCCCTACCATCTCCACCCTCTGTTTATTCAGAGCTGCACCAACCATGTTCATCACCTCACCTGGGATTTACTGAGTTTACCCCTTACAGAGCTACACGATAGGGGTAAAGGAAAGACTAAAAACCAATTTATCTTATATTAAAATTACGACTTAGTAAATATTTTTTTCAGTAATGCAGTTTGCTAGTGACAGATCCAATAACTGAATTCTGGTCCTTTGAGTACCAGGTCAGGGCTTTTGTCATCTACCACATTTACGTTACCTACCACAAGAAGTTTCTTAGTAAAAGGTCCTCTTGTGAAACTGCAGCTAAGGGAAACCAAACTGTCAAAAAGACAAACACCTTAAAGCACTTTCATTCATTCTCTCTGGATTCTGTCATCTCAAGTGGCTAAACACATTAGTAGGAAAACAG
Seq A exon
CTCTGCTTTCAACACTCTTGGCCCTTTCTCAAGAGAACATGAAAATGAAAAAATTTCAG
Seq C2 exon
ATACCAGTTTCATTCCAGGACCTGACTGTGAACTTCACCCAAGAGGAATGGCAGCAACTGGACCCTGCTCAGAGGCTCCTGTACAGGGATGTGATGCTGGAGAACTACAGCAACTTGGTCTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198185-'3-11,'3-2,4-11
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATTCTGTCATCTCAAGTGGC
R:
CTGTACAGGAGCCTCTGAGCA
Band lengths:
132-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development