HsaINT1047400 @ hg38
Intron Retention
Gene
ENSG00000198185 | ZNF334
Description
zinc finger protein 334 [Source:HGNC Symbol;Acc:HGNC:15806]
Coordinates
chr20:46512082-46513554:-
Coord C1 exon
chr20:46513410-46513554
Coord A exon
chr20:46512141-46513409
Coord C2 exon
chr20:46512082-46512140
Length
1269 bp
Sequences
Splice sites
5' ss Seq
ACGGTGGGG
5' ss Score
4.97
3' ss Seq
CGCCATTCTTCCTTACCCAGCTC
3' ss Score
5.96
Exon sequences
Seq C1 exon
CTTCCGGGTGAGGGTCCTGCAGCCCGTGAATCCCTGGTCCCGCCGAGACTTGGACCTGGTGCGAACTGGAGGCGAAGCGGGTGCACCCACAACCTATAGGAAGGGCTGGCGGCGAGCTCTGAGCACTCGGGCGTCGGAGGGAACG
Seq A exon
GTGGGGCCGGGCGGAGCGGGCCTCGGGTCTGCGGAGGGTGGACGCGCGCTCTCCCTGTCTTTGGAGGGAGGGTTTCCTGTGGTCGGGAGGCGAGGCAGCCAGGGCAGGATTGGGCTCCTGACCTGCAGGCCACGGGCGAGCTCTCTCTAGGGCCCTGATTTGCCCGAAGAAGGCGCTTGGTGAAGGTGAAAGGTTTACGCATCCAAGTAGCTAGAACCTCTTTCCAGAACTTCTGCTGATGCACTTAGTCTTGCAGCCATTGATTATTATAGCTCAGCAAAGTTCAGTTCAACTTTCGGAAGAAGGATGTGAGCTGGAATGGGCAGGGTCAAGATTTGACAGGAAAAGACACTTCACTGGAGGTATCTGCGAGAGTCCTGGGTTGGAGGGAAGGAGTACTGGTTATAAATAAGGAAATGATGTCTTCATCACTTCCTAAACACATACATGTCATTCCCTACCATCTCCACCCTCTGTTTATTCAGAGCTGCACCAACCATGTTCATCACCTCACCTGGGATTTACTGAGTTTACCCCTTACAGAGCTACACGATAGGGGTAAAGGAAAGACTAAAAACCAATTTATCTTATATTAAAATTACGACTTAGTAAATATTTTTTTCAGTAATGCAGTTTGCTAGTGACAGATCCAATAACTGAATTCTGGTCCTTTGAGTACCAGGTCAGGGCTTTTGTCATCTACCACATTTACGTTACCTACCACAAGAAGTTTCTTAGTAAAAGGTCCTCTTGTGAAACTGCAGCTAAGGGAAACCAAACTGTCAAAAAGACAAACACCTTAAAGCACTTTCATTCATTCTCTCTGGATTCTGTCATCTCAAGTGGCTAAACACATTAGTAGGAAAACAGGTAAGTGACATAATATCATTTTCCTATTCCAAGAAATCTTTTAATCCTAGAGTCCATTTTAATGCCAAAATAGTGTTCCAGGCTTTGTATATACTAACTTTCGTTGACCTAGTCTCCTATTAATTGGACTCAGACGTTTTCAATTTTTTTCAAAGGAGGCATAGATTGACAGTAATTCAGTAGAAAACATTTGTTGACACTCACTCAGTAAGAAAAGCTCTATGAGACCATTCTAGAACTATAAATGGACAAGTGAACGTTTCCTCAACATGTTGCTTCCTGAACCAGACTGGTCAAAGGGCCATGTTTTTAAATGGGTGTGTGGCTTTGTAGGTAATTGTAGAGCTGCTGTGTGAGCCAAATCGCTCATGATTCCATTCGCCATTCTTCCTTACCCAG
Seq C2 exon
CTCTGCTTTCAACACTCTTGGCCCTTTCTCAAGAGAACATGAAAATGAAAAAATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198185:ENST00000347606:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCGGGTGAGGGTCCTG
R:
TTTTCATGTTCTCTTGAGAAAGGGC
Band lengths:
190-1459
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains