HsaALTD1053780-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000198185 | ZNF334
Description
zinc finger protein 334 [Source:HGNC Symbol;Acc:HGNC:15806]
Coordinates
chr20:46512082-46513597:-
Coord C1 exon
chr20:46513497-46513597
Coord A exon
chr20:46513410-46513496
Coord C2 exon
chr20:46512082-46512140
Length
87 bp
Sequences
Splice sites
5' ss Seq
ACGGTGGGG
5' ss Score
4.97
3' ss Seq
CGCCATTCTTCCTTACCCAGCTC
3' ss Score
5.96
Exon sequences
Seq C1 exon
TGTTCCTGTTTTTTACCTGGACGCCCTTCCGGTTCGCCAGGCTCTTCCGGGTGAGGGTCCTGCAGCCCGTGAATCCCTGGTCCCGCCGAGACTTGGACCTG
Seq A exon
GTGCGAACTGGAGGCGAAGCGGGTGCACCCACAACCTATAGGAAGGGCTGGCGGCGAGCTCTGAGCACTCGGGCGTCGGAGGGAACG
Seq C2 exon
CTCTGCTTTCAACACTCTTGGCCCTTTCTCAAGAGAACATGAAAATGAAAAAATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198185-0-2,1-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTACCTGGACGCCCTTCC
R:
TTCATGTTCTCTTGAGAAAGGGCC
Band lengths:
135-222
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains