MmuINT0179011 @ mm10
Intron Retention
Gene
ENSMUSG00000017667 | Zfp334
Description
zinc finger protein 334 [Source:MGI Symbol;Acc:MGI:2388656]
Coordinates
chr2:165386926-165388259:-
Coord C1 exon
chr2:165387961-165388259
Coord A exon
chr2:165386989-165387960
Coord C2 exon
chr2:165386926-165386988
Length
972 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAAG
5' ss Score
6.84
3' ss Seq
CCCTGTTCTTCCTCACCCAGCCC
3' ss Score
7.6
Exon sequences
Seq C1 exon
GCTCTTCCAGGCGAGGCTCGAGGGGCCTCTGTGCGCCACAATTGCCTGGGGCCTTCTGGGAGCTACAAAAGAAGCGAGGTTTCCCCTGAGCCAGAGGAATTCCGGGTGGCGACTCCGGGGCAGGATCAGAAGAACCAGCGCCTTCCTGGGGCCCGCGGAGGCTTGCGCGTGTCCAGGGGCCGGGCGAGGCTAGCGGGCGCCCCCGGGGCTGCAGGCCTCCGGGCGGGCAGCCTGGGAAGGAGAGAGGTGTGTGCGTGCAAAAAGCGGATCCCAGCAGTCCTGCGGATGCCCTTGGCCCG
Seq A exon
GTAAAGCTTCGGGGGGCTGCTTAAGGGTTGAGCTGCGATTGAGGGAATGAGCAGGTCTGATTTCATTGGCGGGTCTTTCGTTTGGGAGGGAAGGGATGCCAGCCATGGCTGAGAAAAAGGCCTCTGCATCACTTCGAACAAATGCGTGTCGTTCATTAGAGTCCCCATTCTGTTTCGCCAGAGTTGCTCAAACCCCGTCCATCACCATCCTGGAGTTTACTGGTTTCCTTTATATAGAAGAATGACCCAAGAGTATCTACAGGAAAGGGTTTTTATGAGAGTCGAACTTCTTCTCAAGTGAGGAAGGCAGCTATTTTGACCATTTAGGTAGTTTGCTAGTGCCAGAACCAAGAATTGAAATCTGGTGTGTTGATTCGAAGGCCAGGGCTTTGTCTTCTGCTACACTGAAGCAGAGGCCTCCCTCTCATGAAACTGCAGTTAAGCTTGGGGGAGGGGAGCAGAGTGATACGCATCTTAAACCCCTCACTCCCTCTGTCTGGTTTTCTGATTTCATCTGCTGAATGCATTAGTAGGAAAACAGGTAATTGATACCCAAAAAACTAGATGGTAGGTAGGTAGATAGATAGATAGATAGATAATTGATACCCAAAAAACTAGAGGGTAGATAGATAGATAGATAGATTGATTGATAGAATCTCAGAGTTGCTGGCCTGCTCTTTCAGGCTTCATATATACTAGAGCTTATTGATATGATCTAATATGAACTCTGAAGTGTTGTTTGTTTTTTAAGGAGACCTGAATAAGACAGTAGTTCAATTCACACCTTTGTTTCCTTTCACACAGTAAGAAAAGCTCTGATTAGTCCATTCAAAACTGCCCTGGGCCTTCCCTCCGCAGACGCTTTCTGTATGACGCAGGTCGAAGGGTCCTTTCCTTCCAGGGCATGTCTGTGAGTCACTGTCGAGCTGCTAGCCAGTCTGCTGATCACATTCCCTGTTCTTCCTCACCCAG
Seq C2 exon
CCCTTGGATCACCGGTGGTTCCTGGCCCTTTCTTGAGAACGCCTGGAAATGGACAGTACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017667:ENSMUST00000103084:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCAGGCGAGGCTCGAG
R:
GGTACTGTCCATTTCCAGGCG
Band lengths:
356-1328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types