HsaINT0186914 @ hg19
Intron Retention
Gene
ENSG00000198185 | ZNF334
Description
zinc finger protein 334 [Source:HGNC Symbol;Acc:15806]
Coordinates
chr20:45140721-45142194:-
Coord C1 exon
chr20:45141179-45142194
Coord A exon
chr20:45140780-45141178
Coord C2 exon
chr20:45140721-45140779
Length
399 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CGCCATTCTTCCTTACCCAGCTC
3' ss Score
5.96
Exon sequences
Seq C1 exon
TCTTCCGGGTGAGGGTCCTGCAGCCCGTGAATCCCTGGTCCCGCCGAGACTTGGACCTGGTGCGAACTGGAGGCGAAGCGGGTGCACCCACAACCTATAGGAAGGGCTGGCGGCGAGCTCTGAGCACTCGGGCGTCGGAGGGAACGGTGGGGCCGGGCGGAGCGGGCCTCGGGTCTGCGGAGGGTGGACGCGCGCTCTCCCTGTCTTTGGAGGGAGGGTTTCCTGTGGTCGGGAGGCGAGGCAGCCAGGGCAGGATTGGGCTCCTGACCTGCAGGCCACGGGCGAGCTCTCTCTAGGGCCCTGATTTGCCCGAAGAAGGCGCTTGGTGAAGGTGAAAGGTTTACGCATCCAAGTAGCTAGAACCTCTTTCCAGAACTTCTGCTGATGCACTTAGTCTTGCAGCCATTGATTATTATAGCTCAGCAAAGTTCAGTTCAACTTTCGGAAGAAGGATGTGAGCTGGAATGGGCAGGGTCAAGATTTGACAGGAAAAGACACTTCACTGGAGGTATCTGCGAGAGTCCTGGGTTGGAGGGAAGGAGTACTGGTTATAAATAAGGAAATGATGTCTTCATCACTTCCTAAACACATACATGTCATTCCCTACCATCTCCACCCTCTGTTTATTCAGAGCTGCACCAACCATGTTCATCACCTCACCTGGGATTTACTGAGTTTACCCCTTACAGAGCTACACGATAGGGGTAAAGGAAAGACTAAAAACCAATTTATCTTATATTAAAATTACGACTTAGTAAATATTTTTTTCAGTAATGCAGTTTGCTAGTGACAGATCCAATAACTGAATTCTGGTCCTTTGAGTACCAGGTCAGGGCTTTTGTCATCTACCACATTTACGTTACCTACCACAAGAAGTTTCTTAGTAAAAGGTCCTCTTGTGAAACTGCAGCTAAGGGAAACCAAACTGTCAAAAAGACAAACACCTTAAAGCACTTTCATTCATTCTCTCTGGATTCTGTCATCTCAAGTGGCTAAACACATTAGTAGGAAAACAG
Seq A exon
GTAAGTGACATAATATCATTTTCCTATTCCAAGAAATCTTTTAATCCTAGAGTCCATTTTAATGCCAAAATAGTGTTCCAGGCTTTGTATATACTAACTTTCGTTGACCTAGTCTCCTATTAATTGGACTCAGACGTTTTCAATTTTTTTCAAAGGAGGCATAGATTGACAGTAATTCAGTAGAAAACATTTGTTGACACTCACTCAGTAAGAAAAGCTCTATGAGACCATTCTAGAACTATAAATGGACAAGTGAACGTTTCCTCAACATGTTGCTTCCTGAACCAGACTGGTCAAAGGGCCATGTTTTTAAATGGGTGTGTGGCTTTGTAGGTAATTGTAGAGCTGCTGTGTGAGCCAAATCGCTCATGATTCCATTCGCCATTCTTCCTTACCCAG
Seq C2 exon
CTCTGCTTTCAACACTCTTGGCCCTTTCTCAAGAGAACATGAAAATGAAAAAATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198185-ZNF334:NM_199441:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGATAGGGGTAAAGGAAAGACT
R:
AGGGCCAAGAGTGTTGAAAGC
Band lengths:
347-746
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)