MmuEX6107004 @ mm9
Exon Skipping
Gene
ENSMUSG00000017667 | Zfp334
Description
zinc finger protein 334 [Source:MGI Symbol;Acc:MGI:2388656]
Coordinates
chr2:165208739-165213759:-
Coord C1 exon
chr2:165213461-165213759
Coord A exon
chr2:165212426-165212488
Coord C2 exon
chr2:165208739-165208865
Length
63 bp
Sequences
Splice sites
3' ss Seq
CCCTGTTCTTCCTCACCCAGCCC
3' ss Score
7.6
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GCTCTTCCAGGCGAGGCTCGAGGGGCCTCTGTGCGCCACAATTGCCTGGGGCCTTCTGGGAGCTACAAAAGAAGCGAGGTTTCCCCTGAGCCAGAGGAATTCCGGGTGGCGACTCCGGGGCAGGATCAGAAGAACCAGCGCCTTCCTGGGGCCCGCGGAGGCTTGCGCGTGTCCAGGGGCCGGGCGAGGCTAGCGGGCGCCCCCGGGGCTGCAGGCCTCCGGGCGGGCAGCCTGGGAAGGAGAGAGGTGTGTGCGTGCAAAAAGCGGATCCCAGCAGTCCTGCGGATGCCCTTGGCCCG
Seq A exon
CCCTTGGATCACCGGTGGTTCCTGGCCCTTTCTTGAGAACGCCTGGAAATGGACAGTACCCAG
Seq C2 exon
AGATCAATCTCCTTCAAGGACTTGGCTGTGGACTTCACCCGCGAGGAGTGGCAACGTCTGGGCCCTGCGCAGCGTCTCCTCTACAGGGATGTGATGCTGGAGACCTACAGTAACCTCATCGCGGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017667-'1-2,'1-0,3-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGTGTGCGTGCAAAAAG
R:
ACATCCCTGTAGAGGAGACGC
Band lengths:
148-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: