HsaINT0186911 @ hg19
Intron Retention
Gene
ENSG00000198185 | ZNF334
Description
zinc finger protein 334 [Source:HGNC Symbol;Acc:15806]
Coordinates
chr20:45133253-45140779:-
Coord C1 exon
chr20:45140721-45140779
Coord A exon
chr20:45133380-45140720
Coord C2 exon
chr20:45133253-45133379
Length
7341 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GATTAAACATTTTCTTTCAGATA
3' ss Score
8.03
Exon sequences
Seq C1 exon
CTCTGCTTTCAACACTCTTGGCCCTTTCTCAAGAGAACATGAAAATGAAAAAATTTCAG
Seq A exon
GTAAGTTGCTCAGGGATTTACTTCTCACATTATACAGTGAATTTCAAGAGGTTTAGAGTAGTTTGCAGATGAAACGAAATGTATAAAATTCAGCATCAGAGAAGAGTATTCGATCAATACTGGAAAAGTGGACATAGATATACAGAAATCATATATTCCTATAGAGTTACTCAAATGGTTCCAGAAAGGCCCAGACAATATGAGATAGCCCTTACACTGGATTTTTGTGTGGTTTTCCCATCATTTATATCTAAAAATTTTCTTGGATGATCTTTGAGTAAGTGAAGTAGAGACAGTTCTGCCAAAAACAGCTGAGAAAGAAATGGTATGGGTTTCCTGTGACTTCTATACCCAGGCAGAGCACAGTAATTACAGGGAACCAATCCAGTGTCATCCGAACAGGCAGCATTCTGATGGTTCTCTGTGATGTCTATGATCCAGTGATAAGACCTAGAATAAATGGATAAAACCTATAACAAATAAAATAGTGTTCCTCAAATAATGCCCCATAACTTTATTTCAGCTATACTTATAAAACAAGTTCTAGAGGGAACAATTCAATATTATATTCTGTAGGTAAAACTTCTTCATGTGCCTGTCTCATTTCAACCCACTTGATACAGTCTGGTGTCTGCCCCCACCACTCTGATGGATCTGTTCTGGAAAAATTTAGCAGTAACCTAAATATTTTCAAACCCAATGAGTATCTTTCAGTTCATACTTTACCAAACTCTTTGTTGCATTTGACAGTATGACTGCCCCCTCCCTAATAGGCACCTCTGATAATGTCTGTGGTATCACTCACATGATTCTCTTTGTAGCTCTGTAATCATGTCTTTTTTTTTTTTTTTTAATTGAGATGAGGTCTCACTATGTTGCCCAGGCTGGTCTCGAACTCCTGGGTTCAAGTGATCCTCCCACCTTGGCCTCCCAAAGTGCACTGATTACAGCTGTGAGCTGCCACACCCAGCTTGTAATCATGTCTTCTTTATATCTTTTATACAATCTTTTGTTTCATGAACATTGCTATGCCATTGTTAGCCCATTATTCTTTCTGATTTTTTTTCATGCCCTTTGTGGTTTTAACTTGTGAGTCTTTATGCTCTGAGGTATTTCTGCCTCTGAGGACCTCAGCTTGAGATTCTTGCTGAACATCTCTGTAAGGATGTCCAGAAGGCACATGGAGTCCTCATATCCAACATGGAAATAATACTTACAACTTGCTCAATGTGCTGCTGCTTCTTTTTTCCCTATCAGTGCTGCTTCCATCTGACCAGCGAGACAAGCCAGAAAATGAAGGCCATCTTTTTTTTTTTTTTTTTTTGAAATGGGCTCTCACTCTATCACCCAGGCTGGAGTGCAGTGGCACGATCTCAGCTCACTGCAAACTCTGCCTCCCGGGTTCACACCATTCTCCTGCCTCAGCCTCCCAGGTTCACACCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACCCGCCACCACGCCTGGCTAATTTTTTGTATTTTTTAGTAGAGACGGGGTTTCGCCATGTTAGCCAGGATGGTCTCAATCTCCTGACCTCGTGATCCTCCTGCCTCGGCCTCACTAAGTGCTGGGATTACAGGCGTGAGCCATCGCGCCCGGCCTGAAGTCCATCTTAATTCTCCTTTTCCTCACGTCCTACCATACCTGTTTGTCGAGCTTGCTAATGTTGTCACATAAACATTTCTTGAATTTGTCCTTTCACTTCCATCTCCTCCTCTCCTGCCTCAGTTTCTCGTGGGTTGTCATAATATTAGTAGCTTTCTCAGCAGTCTGCTTGGCCCCTTCCTCTTCCCACCTCAAGGCTGTTCTTCACACTGACCAATTCCTCCAAAATGCCAACGTGATCATGTCTTAATACAGAAATGACTTAAGAGGTTCCACGCCACTTGCAGAATACAAGTTCAGCATCCTTGGTATGACCTGTAAGGCTATGTATGTCATGACCGTTTCCTGCCTCTTCTCAGTTCCTACCACTCTGGACCTTTCATTCAACAACTGTATATTGATCAAACAATTGTGTGTGATACGCTATGCTAGATGGTCTACATTCAGCTTGAATGAAGGAGATACTGTCTCTGTCCTCATGGAGCTCATGTGCTAGTGAAAGAGAAAGATATTACACAAGCAATTCAAACTGTGCTGAGGTGGTTCTCAACTCTGCCAGACCCATATCTTTTTACAGAACATACTTTCTTAGGAGCTATATTGGGATGCAAACCTTCCATATTCTGCCATCCCCTTTATCTCTCTTAGTTAATGCCACCCACCCACACCAGGCTGCCTCCTGTTTTAGACTTGGATGAAACCACACACCATGAGGTGTGGTACCAGCTTCCTGAGGGGCCAGATGGTGGAGCCAGATGATGCAACCTGGAAGTGTGCGCAAGTTAACTCACCGTGGGTGAACCTTGAATGAAGGGAAATGGAAAATGAGAAGGAGGTGGGCAGATGAATTCCCCATCCTTTCTCTATTCTGTGCACTATTTCAAGGTTAGTTTCTCCTGGTGGTCCTCCCAGAGATGTCCCATGTGCTGACCCACGTGCTGACCCCATGCTCCTGCTGAGGAAACTTGCCCCTCTTTGGGGCTTGTAGTGAGTTGGTGGGCAGCATGCTAATGCCTCTCATATCTCATTGTTTACATCCTTTCTTTCCTCCCTTCCTTACTTCCCTCACCCTCACTACCCCGGCTTGGAGTTCCCAGATGGAATGATGCAGACCAAGTCCTTGCCTTAGGATCTGTTTTCTAGAAATCCCAACTAAAAGCCATCCTCCCTTTATCCTATTTTGGAGATCATAGATAATACAACTTACTTGTGTAATTTTTAAAAAAATCAATAGAACTCGAATATAGAGGAAAAATAAAAAAGTAATTAAAAATGATATGTATCTTAATATAGACTTGCCCAGATAAAACTATAGTAAAAGAAGAGGAGTCTGGTGTTTATACAGATTACTTTTAGGTTAAATTTCTATGAACGTGATAATTACAAGTTCTCACTGATATGGGACTGATGTGTCATGATTCAAATACTGTACATAGCATTGCCATTTGTGATATTTTTCAAGAGTGAAAATCCCTGAAGTTCCAGTTCAAATCAAATACAAATTGTGCTTGATGTATCCACTATTACATTGAAGAAAATTTAATATACATAAAAAATATATAAAAATACTATGTGTTCAAGTGCCAAATGGAATAAGGTTCTAGGCTCAGATCATTATAAACAGGATTTTTCGTTTATATGAATATTTAAGATTAGAAAGTTATACAGGACTTGGGACATTTCTTTCCTGTAGGAGAAGGTCCTGCATGTTGCAGTGTCTCTACCATCCTTCCTTCCCTCTCCTTCCACCAAATGCCAACAGCATCCCACAGAACCCTGACAGGCAAAAATGTCTCCGCAGATGTGCCACATGCCCCTGATGGAAGGGACCACCCACATTGAGCCCCTCTGAAGAACGATGGTGGTCTGCATTTAGTCTCCTGAACATGCCCCAAATTTTACACTCTTGCTTTTAACCGTGTTTCTACTGTTTGCTCCTTGACTTTCTACCCCTTTTCTGCCTACATTGTGAACATAGCCAGGAGCCATCTCGTCACAGGACCCATTCCTGTCCTCATATTCTTTGTCCACAGACTATGTGTTTACAGAGCAATGCTGGCCCTCTTCTTTGCATTACATGTAGGGTCTGGTCATTATCTGTCTACCTCACAAGTAAGACTATTAGCCTTTAAAGGTGTAGGCACATGTCCTCAGTAGCCATATCCCTGCTCATAGTAGTACTCATCATTTCTTTTTTTGGGTAATCTTGTTTTGTGTGAAATGGTGAACTCTCCTCTGCTCTGAATGGATCATCATTCTACTTACAGTATTGCTTGCAGAATGGACCTGAGTCACCGGGAGAATCGAGTTTCTTTTTCTTTTGTCATAAGCACCTTTCAGTTTCTCACAAAGTGAACACATTTCACTGTTCTTACTTTGGACTTTCTGCTATGAAGTGCACTGGGTCTGCCTGAGCAAGTACAGAACTTTCTAGTGAGGGCTCTTCCCTGGCACTCTTTCTCCCTGGCGTTTTGTTTCTAATATTTTTGCCAGTCATTCTTTCTAGTCATTAAGACCTTATATGTCTATTGTTGTGCCTATAATTATGAGATACTCTTTATCTTCAGGAAGCTTATAGGTCCTTCAGAGGAAGTAATTCATGGAAGAAATAAAATGGATAATGTAACTACTTCTGGTTTAAGAGACAGTTAAGTGGTGATAGCGGGAAAGGCCTCATTAAATTACCTAATAAAATTTGTCAGTAGAAAGATGTATAGCAGATCAAAGAAAAGAAAGACGGGTGACCTAGGATGGTCATGTGGGTGAGGTGAGACATACAGCAGGCCAAAGCCCAGGTGTCTGCAGAGGTGGAGGCAGCATGCCTATTTTTTACTGCTTTATTTTTAAATACGAAGAATGAGAAAAATCATACACAAAATACCTGTGTTTCCTTCACCTCGCTTCCCCTGATCTTTCAAAACTATATTATAGTGATCAGAACCAGGAAATTCACATGAATACAGTATTATTATCTATCGTATTCAAATTCTGCTTATTATTTTCCATAATATCCTTTTTCAGTTCAAGGATCCAACCTAGGAACCCAGGTTGTGTTAAATGTCCTGTCTCCTTAGCCTCTTGCAACCCACGATGGTCCTTCTTTGTCACTTACAACCTTGACACTTTGCTGGCTAGTTATTTTGCAGGGTTCATCCTAGCCTTTTCTTTATTTCCTTTCCCCTTCCCCTTCCCTTTCCCTTGTTTTTCCTTTGTTTTCTTTTCCTTGTCTTTCCTCCCTCCCTTCATTTCTCCTTTCTTTTCCTTTCCTCTTTCTTTTCTTTCTTTCCTTTTTACTTACTTAAGCTTATTTAACTTACTTAATTTTTGAAACTGGGTTTTGCTCTGTTACCCAGGCTGGAGTGCAGTGGTGCAATCATAGCTCACTAAAGTCTTGACCTCCTCAGCTCAAGCAATCCTCCTGCCTTAGCCTTCCAAGTAGCTGGGACTACAGGCATGTGCCACCACTCCTGGCAAAAAAAAAAAAATTTTTTTGAGAGATGGGGTCTCACTATGTTGCCTAGGCTGGTCTTGAACTCCTGAGTTCAAGCGATCCTCCCACCTCAGCCTCCCGAAGTGCTGTGATTACAGGCATGAGGCACCACGCCTGGCCTACCATAGTTCTAAGAATCAAAACCGTATAGAAAGATATTTTAGAGAAGTGTCACTCCTTCTCATCTCTTCTACTCTGTTCCCATCCGTCCATTCTTTCCGTCTGTCTCCACCTCTCCCCTGAATGTAACCAGTTTCATGAGTTTCTGGTGTATCCTTTCCATAATTTTTTTTCACATGTAGTGGTTACATGTGGGTTTTTTTGTTTTTTTGAGATGAGGTCTTGCACTGTCACCCAGGCTGCTGGAGTACAGTGGCACAATCTGAGCTCACTGCAACCTCTGACTCCCAGACTCAAGTGATCCTCTTGCCTCAGCCACCCGAGTAGCACATGCCACCATGCCTGGCTAATTTTTTTTTATTTTTTTGTAGAGATGGGGTTTTGCCGTGTTGCCCAGACTGATCTTGAGCTTCTGAGCTCCAGCGATCAGCCTACCTCAACCTCTCAGAGTGCTGGGATTATAGGTGTGCGCCACCACACCTGGCCATGTGTGTTTTCTTACATCTCCTTTCTTACATAAAAGGTAATATATTATAGATATTCTTTAATACTTTGCTTTTTTCACTTCATATCAGTTCATGGAGACCTTCCTCATTATTTATGCTTTCAAATATTGCTTCTGATCACTGTGGTATCTCTCCTGTGAGCTCCAGAACCATATATCAAACTGCCAGCTAGATATCTGTACTTCTTTACTCAACAGACACTTCAAGCACAGCATGGTAAAGATCAGTGCCTTCATTTCCTATGCTCGATTCTCTTTTTTGTTTTGTTTTCCTAATCTCCACATATACTACTAGCGTCAGCCCAGCTGATCATGTGAAATAATATGCACATTACATCTACTGCACATCAAGTAGTGGTCAACTCTCCTTGCCTCCCGTTATGTAGGACTGATTCTCTCCTTCCCATTTCCCAGGAACTACCTGTGCTCATGTCCTGTAGTAGTGTCTTAGTTTTCTTCCCTTCTAATTTGACCTTTAAGCCAGTTTCCATTTTTCTAGAGTAGGGGACAGCAAATGTTTTCTTTAGAGGACAAGGTCAAAATTTTTGGCTTTGCTGGCCCTGTGGTCTCTGTTGGATTTCCTTGGCACAGCTGTTGTGACATGAAAGCAGTCATAGACTGTGTGTAACAAATGAGCGTGACCACGTTTGGCTCCCAGTGGCCTAGATTTTGCCCACGGACTGAAGTTTGCCAACTCTTATGCTCTAGAGCATTGTTTCAAAATACACATTTGGTCACAAATCTCCAGTCCTTGCTTACAAATAACTCTTTATGGATTTCCATTATTTATAACAGTGATCTCCAAAGTGGAGGATAGGGAGCACCCCAGCAATTCACTGGACTTCTATTCTTGTATTTCAGCCAAAAGAATGAAAAAATAATTAAGCTTTATTGATATTAGTGTATAGCTGGAACTCACTTGGAAATATACTACAATTCCTAAGTAAATGTACGTTAGCGTATATGCAAGAATGTTTTACTGATGTGCCGTACTATCTAAATTTCAAGACTACTAATTAGAGAAAAGAGTTCCTCTATTCTCTGACCTCTGTCCCGCTCCTCACTAACCTTTCCTGTGGAGAGATTGTAGTTCTCGAACTCCCCATATGTGTTTTGTGTCTGTGTATATTCTTAATGGCTACAGTCCTATAAAACATACTGTTTATATTTCAGGACTAAAATTATTATGCTCTCAAGGAAGGGGTAACAAAAATGGAGCAAGCTTTCTTCTTTTGTGATCACCCTTCATCTTGTGTATATGTCCAGCATTGCTCTTTAAAGATGTACATTTCTATTTTTGTCACCCTGTCAGAATGTATGCTCCTAAAGAGTAAGATTAGTATTTTATGTGATTAGTAATCCAGGCAATTGGAATAGCTCCAGGACATGGTATAAGCTCAGCACATTTTTAAAATTCATTTTAAAAAATGAACACAGTGACAGATTTTTAATTTTCTGCCCTCCCACAATTACATCTCTCTATAGCTTTCCATTAGCCATGGCAGTGGTCTTCTTATAGTTTATGTTACCATACATTTGATATCACTCAATTTTGGTCACCCAAGATTAAACATTTTCTTTCAG
Seq C2 exon
ATACCAGTTTCATTCCAGGACCTGACTGTGAACTTCACCCAAGAGGAATGGCAGCAACTGGACCCTGCTCAGAGGCTCCTGTACAGGGATGTGATGCTGGAGAACTACAGCAACTTGGTCTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198185-ZNF334:NM_018102:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=100.0),PF128122=PDZ_1=PU(16.4=75.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)