HsaEX0073447 @ hg19
Exon Skipping
Gene
ENSG00000198185 | ZNF334
Description
zinc finger protein 334 [Source:HGNC Symbol;Acc:15806]
Coordinates
chr20:45133253-45140779:-
Coord C1 exon
chr20:45140721-45140779
Coord A exon
chr20:45134946-45135097
Coord C2 exon
chr20:45133253-45133379
Length
152 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTATTTTTTTGTAGAGA
3' ss Score
9.37
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
CTCTGCTTTCAACACTCTTGGCCCTTTCTCAAGAGAACATGAAAATGAAAAAATTTCAG
Seq A exon
AGATGGGGTTTTGCCGTGTTGCCCAGACTGATCTTGAGCTTCTGAGCTCCAGCGATCAGCCTACCTCAACCTCTCAGAGTGCTGGGATTATAGGTGTGCGCCACCACACCTGGCCATGTGTGTTTTCTTACATCTCCTTTCTTACATAAAAG
Seq C2 exon
ATACCAGTTTCATTCCAGGACCTGACTGTGAACTTCACCCAAGAGGAATGGCAGCAACTGGACCCTGCTCAGAGGCTCCTGTACAGGGATGTGATGCTGGAGAACTACAGCAACTTGGTCTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198185_MULTIEX1-4/4=2-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=100.0),PF128122=PDZ_1=PU(16.4=75.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCTTTCAACACTCTTGGC
R:
CCACAGAGACCAAGTTGCTGT
Band lengths:
186-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)