HsaEX0073444 @ hg19
Exon Skipping
Gene
ENSG00000198185 | ZNF334
Description
zinc finger protein 334 [Source:HGNC Symbol;Acc:15806]
Coordinates
chr20:45133253-45142193:-
Coord C1 exon
chr20:45142049-45142193
Coord A exon
chr20:45141179-45141205
Coord C2 exon
chr20:45133253-45133379
Length
27 bp
Sequences
Splice sites
3' ss Seq
CTGGATTCTGTCATCTCAAGTGG
3' ss Score
3.05
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CTTCCGGGTGAGGGTCCTGCAGCCCGTGAATCCCTGGTCCCGCCGAGACTTGGACCTGGTGCGAACTGGAGGCGAAGCGGGTGCACCCACAACCTATAGGAAGGGCTGGCGGCGAGCTCTGAGCACTCGGGCGTCGGAGGGAACG
Seq A exon
TGGCTAAACACATTAGTAGGAAAACAG
Seq C2 exon
ATACCAGTTTCATTCCAGGACCTGACTGTGAACTTCACCCAAGAGGAATGGCAGCAACTGGACCCTGCTCAGAGGCTCCTGTACAGGGATGTGATGCTGGAGAACTACAGCAACTTGGTCTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198185_MULTIEX1-1/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=100.0),PF128122=PDZ_1=PU(16.4=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCACCCACAACCTATAGG
R:
AGTTGCTGCCATTCCTCTTGG
Band lengths:
125-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)