RnoINT0168747 @ rn6
Intron Retention
Gene
ENSRNOG00000051836 | Zfp92
Description
zinc finger protein 92 [Source:MGI Symbol;Acc:MGI:108094]
Coordinates
chrX:157391604-157392054:-
Coord C1 exon
chrX:157392022-157392054
Coord A exon
chrX:157391731-157392021
Coord C2 exon
chrX:157391604-157391730
Length
291 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
ACATAACTGGCTTGCTTTAGGTG
3' ss Score
6.74
Exon sequences
Seq C1 exon
ATGGCGGCCATTCTTCTGAGGGCAAAGCCCAAG
Seq A exon
GTAAGTGGTTAGTCTCCCCTTCACTGTCCCAGAATTTGTCCTTAGCAGTTTCCAAGTGCTTCTGCTATATGGAGGGAGCTTTTGCTGCCCTGCCCCATGCAGCATGCTGCTTTCCTGAGTCTCCTTTGCTAGGTTTTCTACTTCTGTCTGCTCCTCTTTCCTGAGACAAGACTTGCTGCTGAGTCGCTCCTGACTGCTGAACTCTCCAGGGACAGGGAGCCGTGTTTTATTGTTTGCATCTAGGAATAACCTAGCATTTTAATTCCCTGACACATAACTGGCTTGCTTTAG
Seq C2 exon
GTGACAGTATCTTTTGAGGATGTGTCTGTGTACTTTACAAAGACAGAATGGAAACTTCTGGATCTCAAACAGAGGAACCTCTACAAGCAGGTGATGCTGGAAAACTACAGTCATTTGGTGTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051836:ENSRNOT00000085139:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCGGCCATTCTTCTGAG
R:
CCACTGACACCAAATGACTGT
Band lengths:
160-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]