HsaEX0074075 @ hg38
Exon Skipping
Gene
ENSG00000172888 | ZNF621
Description
zinc finger protein 621 [Source:HGNC Symbol;Acc:HGNC:24787]
Coordinates
chr3:40525779-40530316:+
Coord C1 exon
chr3:40525779-40525864
Coord A exon
chr3:40529319-40529445
Coord C2 exon
chr3:40530209-40530316
Length
127 bp
Sequences
Splice sites
3' ss Seq
GCAGGAACCTGTTGTTTCAGGAG
3' ss Score
2.62
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
CTCTTGAGGATCTTGCTTGTCCAAACCCAGAAGACAGTGCATGAAGCCAGGGGACATCCGCCATGCTCCAAACAACTTGGCCTCAG
Seq A exon
GAGTCAGTGACCTTTGAGGATGTGGCTGTTTACTTCACCCAGAATCAATGGGCCAGCCTCGACCCTGCGCAGAGGGCCCTGTACGGGGAGGTGATGCTGGAGAATTATGCAAATGTGGCTTCTCTGG
Seq C2 exon
TAGCGTTTCCATTCCCCAAACCTGCTCTGATCTCCCACCTGGAGAGAGGGGAAGCACCATGGGGCCCAGATCCCTGGGACACCGAGATTCTGAGAGGCATCAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172888_MULTIEX1-1/4=C1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
ENST00000310898fB30858
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTGAGGATCTTGCTTGTCCA
R:
CTTGACTGATGCCTCTCAGAA
Band lengths:
194-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development