HsaEX1046505 @ hg38
Exon Skipping
Gene
ENSG00000172888 | ZNF621
Description
zinc finger protein 621 [Source:HGNC Symbol;Acc:HGNC:24787]
Coordinates
chr3:40525779-40530316:+
Coord C1 exon
chr3:40525779-40525864
Coord A exon
chr3:40529495-40529575
Coord C2 exon
chr3:40530209-40530316
Length
81 bp
Sequences
Splice sites
3' ss Seq
CAGTTTGCTATCTTCCTCAGATG
3' ss Score
7.65
5' ss Seq
TGGGTAGGG
5' ss Score
4.66
Exon sequences
Seq C1 exon
CTCTTGAGGATCTTGCTTGTCCAAACCCAGAAGACAGTGCATGAAGCCAGGGGACATCCGCCATGCTCCAAACAACTTGGCCTCAG
Seq A exon
ATGTTTTGGGGATTCTAGTAGCCCTTGGGTTTGATGACTTCAGAGGAGAGTTTTGCAATCAGCAGCCTCCAGAAATACTGG
Seq C2 exon
TAGCGTTTCCATTCCCCAAACCTGCTCTGATCTCCCACCTGGAGAGAGGGGAAGCACCATGGGGCCCAGATCCCTGGGACACCGAGATTCTGAGAGGCATCAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172888_MULTIEX1-2/4=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGTCCAAACCCAGAAGACA
R:
TGCCTCTCAGAATCTCGGTGT
Band lengths:
171-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains