HsaINT0187906 @ hg38
Intron Retention
Gene
ENSG00000172888 | ZNF621
Description
zinc finger protein 621 [Source:HGNC Symbol;Acc:HGNC:24787]
Coordinates
chr3:40529319-40530316:+
Coord C1 exon
chr3:40529319-40529445
Coord A exon
chr3:40529446-40530208
Coord C2 exon
chr3:40530209-40530316
Length
763 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TTTCTCTTTTCTTCATGAAGTAG
3' ss Score
3.35
Exon sequences
Seq C1 exon
GAGTCAGTGACCTTTGAGGATGTGGCTGTTTACTTCACCCAGAATCAATGGGCCAGCCTCGACCCTGCGCAGAGGGCCCTGTACGGGGAGGTGATGCTGGAGAATTATGCAAATGTGGCTTCTCTGG
Seq A exon
GTAAGGCCTCCCTCTGTGGCCCTTTGTAACAGTTTGCTATCTTCCTCAGATGTTTTGGGGATTCTAGTAGCCCTTGGGTTTGATGACTTCAGAGGAGAGTTTTGCAATCAGCAGCCTCCAGAAATACTGGGTAGGGAAATCCTTGGTTCTCTTTGTTTTTTGTTTGTTTGTTTGTTTTGTTTGTTTGTTTGTTTTGAGACAGAGTCTCGCTCTGTCACCTAGGCTGGAGGGCAGTGGCATAGCCATGGCTCACTGCAGCCTCCAACTCCTGGGCTCAAGCAATTCTCCTATTTCAGCCTCCCAAGTAGCTGGGACTATAGGCGTGTGCCACTGTGCCTGGCTTCTCTTTGGTTTTGAAATTAGACTTCCTTATACTCCAGGAACAGTGTGGTCCTGGGCCCTGAGGGAAAGCATTCTTTCTGGCACCCTAAGTGAGCCCTTTGTTCCTTTGTCCATCCAGTTTTCTGGGGATGTTGGCCCTCCCTTTGTGGAAGGTTCTCCCAGGGGAGCAGTAGGTACATTTTTCCTGAGGGAGTTTGCCTTCTTCTGAGTCAGGGCCAGAATGCAGTTTCTTTCTGAGAAGAATCATACCTCCTTGGCTTTATCGTGGAGCACAGTTTGGACCTCCTTGTCAGAACTCTCACTTGGTCTGCTGGTGTTCAATTTCTCTCCCAAGTAGCCTGATGGAGGGTGGGCTGAGAAAGATCCCAGGAATAGCTCTGGACGTCTCCCCTCAATTTGTCTTTCTCTTTTCTTCATGAAG
Seq C2 exon
TAGCGTTTCCATTCCCCAAACCTGCTCTGATCTCCCACCTGGAGAGAGGGGAAGCACCATGGGGCCCAGATCCCTGGGACACCGAGATTCTGAGAGGCATCAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172888:ENST00000339296:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGACCTTTGAGGATGTGGC
R:
CTTGACTGATGCCTCTCAGAA
Band lengths:
230-993
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains