HsaINT0187906 @ hg19
Intron Retention
Gene
ENSG00000172888 | ZNF621
Description
zinc finger protein 621 [Source:HGNC Symbol;Acc:24787]
Coordinates
chr3:40570810-40571807:+
Coord C1 exon
chr3:40570810-40570936
Coord A exon
chr3:40570937-40571699
Coord C2 exon
chr3:40571700-40571807
Length
763 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TTTCTCTTTTCTTCATGAAGTAG
3' ss Score
3.35
Exon sequences
Seq C1 exon
GAGTCAGTGACCTTTGAGGATGTGGCTGTTTACTTCACCCAGAATCAATGGGCCAGCCTCGACCCTGCGCAGAGGGCCCTGTACGGGGAGGTGATGCTGGAGAATTATGCAAATGTGGCTTCTCTGG
Seq A exon
GTAAGGCCTCCCTCTGTGGCCCTTTGTAACAGTTTGCTATCTTCCTCAGATGTTTTGGGGATTCTAGTAGCCCTTGGGTTTGATGACTTCAGAGGAGAGTTTTGCAATCAGCAGCCTCCAGAAATACTGGGTAGGGAAATCCTTGGTTCTCTTTGTTTTTTGTTTGTTTGTTTGTTTTGTTTGTTTGTTTGTTTTGAGACAGAGTCTCGCTCTGTCACCTAGGCTGGAGGGCAGTGGCATAGCCATGGCTCACTGCAGCCTCCAACTCCTGGGCTCAAGCAATTCTCCTATTTCAGCCTCCCAAGTAGCTGGGACTATAGGCGTGTGCCACTGTGCCTGGCTTCTCTTTGGTTTTGAAATTAGACTTCCTTATACTCCAGGAACAGTGTGGTCCTGGGCCCTGAGGGAAAGCATTCTTTCTGGCACCCTAAGTGAGCCCTTTGTTCCTTTGTCCATCCAGTTTTCTGGGGATGTTGGCCCTCCCTTTGTGGAAGGTTCTCCCAGGGGAGCAGTAGGTACATTTTTCCTGAGGGAGTTTGCCTTCTTCTGAGTCAGGGCCAGAATGCAGTTTCTTTCTGAGAAGAATCATACCTCCTTGGCTTTATCGTGGAGCACAGTTTGGACCTCCTTGTCAGAACTCTCACTTGGTCTGCTGGTGTTCAATTTCTCTCCCAAGTAGCCTGATGGAGGGTGGGCTGAGAAAGATCCCAGGAATAGCTCTGGACGTCTCCCCTCAATTTGTCTTTCTCTTTTCTTCATGAAG
Seq C2 exon
TAGCGTTTCCATTCCCCAAACCTGCTCTGATCTCCCACCTGGAGAGAGGGGAAGCACCATGGGGCCCAGATCCCTGGGACACCGAGATTCTGAGAGGCATCAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172888-ZNF621:NM_001098414:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGACCTTTGAGGATGTGGC
R:
CTTGACTGATGCCTCTCAGAA
Band lengths:
230-993
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)