HsaALTA0009764-2/3 @ hg19
Alternative 3'ss
Gene
ENSG00000167377 | ZNF23
Description
zinc finger protein 23 (KOX 16) [Source:HGNC Symbol;Acc:13023]
Coordinates
chr16:71487945-71490731:-
Coord C1 exon
chr16:71490667-71490731
Coord A exon
chr16:71488072-71488121
Coord C2 exon
chr16:71487945-71488071
Length
50 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GCGCTCTGCCCCTCACTTAGGGC
3' ss Score
6.99
Exon sequences
Seq C1 exon
CTCCAGCCCTTCTCTGAGACGGGGACCAGGGGATGGCAGCCATGCACCTGACAGCCTGGCCCCAG
Seq A exon
GGCCTGAGCTATGGAATTGGCCCTAGGGCAGCAGGAACCTATTGTTTCAG
Seq C2 exon
AAGTCGGTGACCTTTGAGGACGTGGCTGTGTACTTCACCCAGGCGGAATGGGATGGCCTGTCCCCTGCACAGAGGACCCTGTACAGGGATGTGATGCTGGAGAATTATGGGAATGTGGCCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167377-11-17,11-16,11-15-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGCCCTTCTCTGAGACG
R:
TACAGGGTCCTCTGTGCAGG
Band lengths:
148-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)