MmuALTA0020688-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000044676 | Zfp612
Description
zinc finger protein 612 [Source:MGI Symbol;Acc:MGI:2443465]
Coordinates
chr8:112606578-112607549:+
Coord C1 exon
chr8:112606578-112606642
Coord A exon
NA
Coord C2 exon
chr8:112607507-112607549
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCCTCTGCCCCTTTACTTAGGGC
3' ss Score
10.62
Exon sequences
Seq C1 exon
CTCCAGTCCTTCCTTGAGAGGGAGACCAGGTGACAGCAGCCATGATCCCATCGGTTTGGCCCCAG
Seq A exon
NA
Seq C2 exon
GGCCTGAGCCATGGAATTGGCCCTAGGGCAGCAAGAACCTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044676-2-2,2-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGTCCTTCCTTGAGAGGG
R:
AACAGGTTCTTGCTGCCCTAG
Band lengths:
107-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: