MmuINT0179575 @ mm10
Intron Retention
Gene
ENSMUSG00000044676 | Zfp612
Description
zinc finger protein 612 [Source:MGI Symbol;Acc:MGI:2443465]
Coordinates
chr8:110084344-110092741:+
Coord C1 exon
chr8:110084344-110084451
Coord A exon
chr8:110084452-110088421
Coord C2 exon
chr8:110088422-110092741
Length
3970 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
TTTTCGACTTCTTTTGGTAGAAT
3' ss Score
5.8
Exon sequences
Seq C1 exon
GATTTCCACTTCTCAAACCTGCTGTGATCTCACAGCTAGAGGAACGAAAGGATCTGGAAAACCTGTTTCAGCTGGCCACTGGAACGGACTCCCAGGGCCTCTGGACTG
Seq A exon
GTAAGGGAGGCCCGCACTGCCAGGTTTCTGCAGGATGGCAGTGCATTTTCCCAGATGCCCTATTCTGTCTCTGACCCTACCATTTTCAAACAAGAATGTAGAATTCGTGGTTTGGGGGGTGGAAGTCCTTAATATTTTTGAGCATTGCCTCTAAAAGTGGAGGATAGAGCCTTAACCTTTTTACACAGAGGCAGAAATAGCTAAAGCTTCAGGCTTTGCTGTGGTATGATACCGTCTGTGTTTGTGAGGAAACTGTTTTTTTCTAGCTATGTGACGGAGCAGGTCAGTTATTTGAGGTGTCTAGTGTCCAGTGAACTCACCTCTGAAACTGTGGCAATAAAGTAGAGCAGTGGTGCCTGCCACTCCGTGGGTTCAAGGCCAGCTGTGATGACTTACATTAAGGCTCTAGCTTAGTTAGATTGTAATTATCTGTTCACTGAGAGTATAAATAAACGTGCCCCTATCCATGCATCTTGAATGCTATGTACACTCAGTGATGCATACATGATTACTCGGGATTCCTGGAGGTACACAGACTGTCAGTGGGTCTTGGGCCCAGGCAAGTGTCTGCATTTACATTCCCACTGTGTGGCCCTTAATCAAAGGTGTTCAGGTCTCATTCTGTGTGTCACAGTTAATCTCATTTGTCGGCAAAAAATGAGACAGGCTCTGTGTGGGCAGAGGGAGAAGGTGGGCACATAAGAACTGTGGTAGTGGTGAAACTATACAGCACAGAACAAAAGGCCCTTTTCTTAACCGGTGATTTCTGTGAAGTCTTACTTGCTGGACCTTAGATCCTTTATGAAAGAGAAGCTGGAAAATAAGATTTGGGTGGGCAGCTCAGTACATCAAAAGTTAAATGGAAGGCACGTTAGTAAAGATGAAACAGACATGGAGAGTAACATCCGCCATGCCATAGGGCTTGGAAGGTCACTAATCAAAGCTGGTAAAGAGGAAGTTGTTGATCTCCATGACACGTACAGATATTAATCAATCTAAAAAATGTCTATCCTTAGAAACCAAAGACAAGCAAGGCCTAGGGATGCAGCATAGGAGAAGAACGTTTCCTTAGAATGCACGAGGCCCTGCAGTTGATCTTCACTGTGCAAAAGCTGTGGTGGTGTGAGATAACTTAGCTATCAGAGACCCCAGTGCTGTCAGATGTTAGCGAGGTAGCAGGACAGAGACAGGACTTGTGGAGCCGGGGTGAATTGTTAGTCTCTCTGGAAGAAAAGTTGGTACTTGGTAACCTGGATGCTGTCTTCTAGAGCTGAAGACTGGTAAGTAATGAGCCGCTCTCTTCGTGCCTTGATGCACCTGAGCATCAGGCAGTGGGAACAACCCGAGTTCTCTGTATAGAGGATGACTAAGCTGAGGTGCCTCTGCAGGCTGGAGGGGTTTTTAGCGATTAAGCTATTATATTTTTGCAGACTTTAAAAATATTAGAAATGTTTATCATTAAAGGAAGGAATAAAATCTAGTTTTGAAAAAGAAAAGTTATTTAAAAGATTAGTATAAGTTCATTTTATATACCTGGTAACTCATTTTTTTTTGGATAAATGGATTTTAAAGTCTGTTACTATGGATGCCTTAATCTTTTTGAATTATTGGAACAGAGTATAGATTGGTTCATAAACAACATAATTTGCATCTTTCATATGCCTTAGTGTGGGCTGCTATAACAGAGTACCCTGGATGGTTTTTAAGAACACGAATTTGTTCTTCCAGTTTTGGAGGTGGGAAGTCCGAGATCCAGGTGAGGTGGATGTGAGCTTGACAAGGGCCTGTTTGCAGATCAGTAGGCAGCTATTTGTCTTCTTGCTAAGCCCCTCACATGCTAGAAGGGAAAAGAACCTTACCAGAGTCCATCATGAGCATTCTGCCAAAGGTTCTCCTGCTAATCGTGACAGGTAGGGATGGACAGCAAGGAGCACTGGATCTGTAGCAACATTCTGGTTAACTTTGAAAAGGCTCATTTGTTTTAAAGTCCTCTCTAGAGGAGCCCAGGTTACTCGTGCTACTGAGAATTTTAATGAGGAAGTAAGGCAGGAGCATTATCCCTTTTTTCTTTTTACTTATTCTCCTCTTACACAGTACATCCCGACGGCAGCCTGCCCTCCCTCCGCTCCTCCCAGGCTCCTCCCCCAGATCCATTGCCCCCTTGTTTCTCTTCAGAAAAGAGCAGGCCTCCCAGTGATGGCAAGCAAACATGGCATAGCAAGATGCAGCAAGAGTAAACTAGATGAAACAACCCAGTAGGAGGAAAAGGGTCCTAAGAGCAAGCAAAAGAGTCAGGGACACCCCCGTCCCCACTGTTAGGAGCCCCACAAAAACCCCAAGCTAAGCAACTACAGCATGTATGCAGAGGACCTAGCGCAGACCCAGGCAGGCTCTGTGAATGCCACTTTAGCCTCTGAGCTCCTAGGAGCCCTGCACAGCTGATTTTGTGGGCTGTGTTCTGGTGTCCTCAACCCCCCTGGCTCCTATAATTCTCCTCCCCTTCTACTGGGTTTCCCAGGCTCTGCCTAATGTTTGGCTATGGGTCTGCATCTGCCAGAGGAAGCCTCTCTGATGCTGATGGGGCTGGGCACCACCTATGAGTATCGCAGCAGAGTATTAGAACCCTAGGTCTCTGAGCCATCCACAAACTCTGAGTCACCATTGCCCCAGTAGATCTTACAGGCAGGACAGATGTGGGTCGAAGGTTTTGTGGCTGGGTTGGTTTCCAGTCCCACTGCTGGAAGCCTTGCCTGGTTACAGACAATGGAAGGGCATATTTTATGTGGTTGGGGGGAAATGAGAGATGAAAAAATAAAGGAAGCTTTTTGTGGGGGAGGGATTTGAGAAGTGGAGAGGTCAGGACTATAAAATTATGATTTAAAAAGAATGTTCAGAGATGATTGGTTTTTAGGATCGATGGAAAGACATTTTGTACAACAGTATTTTAGGAGAGATAGGAAGAGGTGTGGCCAGGTGGGCCTTACAAAGCTTTGCAGGAAGGCTCGAATGAAGTTCTAGGGAAACAAAACCCAGTTCTTCTGCTTTCTCTGCTGATGTCTGTCAGACCCGGTTTCGCAGCATGTCCTTAGGTCCTCTACCTTTCCTTTGTTAGTCATTTCCTGCTTTTATAAGGAGCTTGATCTATAGGGACAACCAAGAAGGAACTGGAGAGTGTAGGAAGGTGCGAGATGATGGGAGCACACTGATCCGATGGACAAGACCGGGAGTTTGCTTCACTGCTGCCACCTTTGTTCAACCTTTGTTACCATGGTCACCTTTGCAGTGCCCTTGTCCTTCGAGAGAGTGAATGGGGTCGCTTGAGTGAGGCGGTCTCACAGAGCTGTATTTATTCAGACGTTTTCTGACACAGAGATACATGTTCTGTCCACTCTTCTCACTCTTCACAGTTGGAATATGCTTTGCTTGCTTGCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTCTTTCACCTTAAAGTATATCTTGGGCATCTTCTCATGGACCACATATCTGGATCTATTTCCTTCCTTTACCAATGGCAATTATACCTTAGGGATGAGCCTTGGGTTATTTGACCTAGTCTAGTGATTTTTAAAGACACTTTAGAGCTGGGCATGTTGATACACACGTGTAATTCTAGCCTTTACAAAGTAGGTGCAGGGGAGTCAGTTCAAAGCCAGCCTAGGCAACACATTGAGACCCTATATATAATAAATAGCTTTCTAATTGCCATATTCTCTTCCACCACGGTTATGTGACCTCTCTTGTTATTTTCGACTTCTTTTGGTAG
Seq C2 exon
AATGTACTGCTGTCCAGTCCGGCAATAATCTGACAAAAGAAGTGCATGAAGAAGAAAAGAGTACATTATTTGAACTTCAGAAGGACTTTTCTCAGGAAACAAACTTTTCAAAAACGTATATTTTGGGCCAACAACAGGAAATCCGGTCAGCAGGAAGTGAGAGGGGGAGTGCCAGTGCCACCGATGGAAGAGCTAAGGCGAGCTCTGTGGAAGGGTGTTTGTTTAGTCAGACTCCACAATTGTCCCAGGATCATACCAGCTCCACTGGAGAGCTATATTCTGATACCAAACTTAGTAAGAGTGAAAGAATCACTACAGAGGAAAGACCTCTGAAACCCAGAGAATTAGCAGAGGCTTCTCAAGGCAGCCCTCAAGTTAATCAGCTTCCAGAGATCTGTGATGTGGAGAAGCCCTACCAGTGTGCAGAATGTGGCAAAGCCTTCAGTGTTAAAGCCAAGTTCGTCTGGCATCAGAGACTTCATAATGGAGAGAAACCTTTCAAATGTGTGGAATGTGGGAAGTGCTTCAGCTACAGTTCCCACTACATCACACATCAGACAATCCACAGTGGAGAGAAGCCTTATCAGTGTAAGGTATGCGGCAAGGCCTTCAGTGTTAATGGAAGTCTCGTTAGACACCAGAGGATCCACACAGGAGAGAAGCCGTATCAGTGCAAGGACTGCGGGGCTGGCTTCGGCTGCAGTTCTGCGTACATTACTCATCAGAGAACCCACACTGGAGAGAAGCCTTACGAGTGTAGTGACTGTGGGAAAGCCTTCAATGTTAACGCAAAACTGATTCAGCATCAAAGAATTCACACTGGAGAGAAGCCTTATGAGTGCGATGTGTGCGGGAAGGGCTTCCGGTGCAGCACCCAGCTTAGGCAGCATCAGAGTATACACACTGGGGAAAAGCCGCATCGCTGCAGCGAGTGTGGGAAAGGCTTCACTAAAAATGCAAAGCTCATTCAACATCAGCGAGTGCACACGGGGGAGAAGCCCTACGCCTGCAGTGACTGCGGAAAGACTTTCAGTGCCAAAGGGAAGCTGATCCAGCACCAGAGGATCCACACGGGCGAGCGGCCGTATGAATGCAGTGAGTGTGGGAAGTCTTTCAGGTGTAACTCCCAGCTTCGGCAGCATCTGAGAATCCATACTGGGGAGAAGCCATATAAGTGCAGTGAGTGTGGCAAGGCCTTCAACGTCAATGCGAAGCTGATGCAGCACCGGAGAACCCACACCGGGGAGAAGCCCTTCGAATGCAAGGAGTGCGGGAAATGCTTTACTTCTAAAAGAAACCTGCTGGATCACCAGCGAGCCCACACCGGAGAAAAGCCGTATCAATGTAGCGAGTGTGGGAAAGCTTTCAGTATCAATGCCAAGTTAACCAGACATCAGCAAATACATACCAGGGAGAAGCCTTTCAAGTGTATGGAATGCGAGAAAGCGTTCAGCTGTAGCTCTGACTATATTGTGCACCAGAGGATCCACACTGGAGAGAAACCCTTTCAGTGTGGCGAGTGTGGCAAAGCCTTCCACGTCAATGCTCACTTAATTAGACACCAGAGAAGCCATACTGGGGAGAAACCTTTCCGGTGCACAGAATGTGGCAAGGGCTTCAGCCTTAGTTCTGACTGTATTATACATCAGACTGTCCATACTTGGAAGAAACCCTATGTATGTAACGTATGTGGGAAAACTTTCAGGTTTAGCTTCCAACTAAGCCAGCACCAAGATGTTCACAATGAAGACAAATCCTAATGAAGAAAAAAAAAACTAAAAAAACAAAAAAACCCCAACCCACCAACCAAACAAACAAAAAAACACCCCAAAAACAACAACAACAACAAACCCACACAGATACACAAAATAATACCAACAAACAAGCCAAAACCAAACCAACCAACCAAACCTATGTTTAATAAGAAACGGATTGTGGCTCATCAATTATTACTTGGAGGAAAACCATTAGAGGGAAATGATTGTGGCAGTCTTCATTTGGAAACAATTTTTCTCTTTTATTTTTAATCAGGATGAGCAGCTGGAAAAATATATCAAAAATAACGTTTTTTAAAAATGTATATTTGTTTTTCAAGACAGGGTTTCCCTGTGTAGCTTTGGCTATCCTGGAGCTGGCTGTGTAGACCAGGCTGGCCTCCAACTCAGATGCACCTGCCTCTGCCTCCTGAGTGCTGATGTTAAAGGTGTGCATCACCACCACCCAACTAATAACTTGATTTATAGCAGTAACCAGTCAGGAAATATAATGAAAGAAAACATCCTATTCCCAGCAGCACCACGAAAAGTAGATTTTCTAGGAATTTTGTGGGGCTGAAGAAAATGAGGGATTCTCAACTGAGGGAGACCAAAGGAAACAAATACAAGAAGGCGGAGAGAAATGAATGTATTGCTGCTTCATTTTGACAACAAGAATGCATTACACTTTCTTTAAAAGGGGGAAAAGCAAACATTAAAATAAAAATTGTTCAAAGAAGCCTTTAAAAACATCAGATCCAAAGTGGAGATGAACAAGAAGGAAAATGTTGGCAAATGACCACTCAAAAATAAACAAACCTGTGTGTTTGGTTGTAAATACTTCCAAATAAGTTTGAGTTGTAAAACACAGACATACACACACACACAAATGGAAAGACCTTTGTAAAATCTGTGATATAAAGTGTAATATCTAGTGCTCAGATTTTAACAAAAGATAACTTAAAAATCAATAGTGACATTAACAGACAGTATTCTAGAGTCACAAGAGTTCTAAAGAACCCCAAGGAGTGCAAATTAGTGAAGACTTGCATGCATGTCACATTGAGTATATGATATGCTTACCCCCCAATCCTCTGCAGCCCTCAGTGAATGTAGATGCTGTATTTGCTATCGATGCCTGCCATACAAGCATACACTATATTAACAGCATGTTAGAGTTCCTACTTTGTATTGACTGAACTCTTCAAACATAGCTACGCCCTGAAGGAAGGTATCCTGCTTTGATTTTGATGCTTTGTGAATTGGGCTCCATGAAGATGTTGGAATTCTTGAGATACCCTTTGAAATCTCTTACCCCCTTTAAGAAAAATGTAAGCCATTAGTAAGAGCACTTGAGCTGCCCAGAAGCTGAGAAACAGCTGTTGTTTCTCTGTTGTCAACTGGTAATAGTTAAGAAAAGTTTTCTTACTTAAAACACCTCTAGTACCAAATATTCATGTTTCCACACCAGTTCAATTGTTTGAAGACACCAACTGGATGTCCTCCAATCTATATCAATTTAGTCTCTACCCATAATATCCTGCTAGTGAGATGGGCTTAGTCTGAGAAGACTGTCTCTCCCCACCCTCCCCACATTCAGACATTAATGAGGAGTCCTACATTACTGATTTGGCTACAGATTGAACCCTCTGGGTTCAGTAATTTGCTATGGTAACTCACCAAACATAAATTGTTTAAAGTTACCATTTACTCTATATTGTGAATGTCACAGGAGCAGCCAGATGAAGAGATGGAACAAGATCCAAAGGGTTCCCACGTGAAGGTGTGTTTGTCTTTATAGAGTTGGAGTGCCTTACCCTATTGAGCCTTGTTTAGTGCTTTTATGGAGATTACACTGTGTGCCCATGATTGATGAAGTCCTTGGCTGTTACATAAGTTTCCCCTGCCAGAAGTCAACAGGGGTTGCTGAAAGTTCCAACTCTGTTAGCACATAGTTGGCTCCTTTGACAATCAGCCCTAATCCTGGAGTTAGTGACACTGAGTCTAGCAACAAGTCACTTTAGCATAAACAGATGGCTGTAAGAGACCTTAGGAGTAACAAAAGGCTTTATAATATTTTTCTGCTGGAAACAAGAGAGACCAAACATACTTAAGTCACAGACAGAAACCCATTTACTTGGTTCACATCCCCTTATGTCTGTCTGGGCAATTTGGGGATTTGTTTGTCTTTGGTTCAGTAGTTAAGTGGGATAAAATGAAAATGCAGCACTCTGGAAGCTGTCAATCTAGGAACACACACGAACATTAGACAGTGCAGAATATTAGTGTTTTTCCATAAAGCAGTTCTTTCCAAAATGTCTTCATTTAAAAGTATGTAATGGCTAGTGACATGGCTCAGCAGGTAAAGGCGAAGCCCAACCTGAGTTTCAACCTCTAGAGCCCACATGGTGGGAAGGACAGACTGACACACAGTTGTCCTCTGGTCTCTGTGCATGCATGAAAACAATGTCATTCTTAAAAACTAAAATACCTATACTGAAATTAAGCATTTTGATCATCTTGAAGTGTGCAACTTGTCTATTCAAATAAATCTAATAAAACTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044676:ENSMUST00000212754:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.146
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.4),PF0062824=PHD=WD(100=9.2),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF0009621=zf-C2H2=WD(100=3.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types