HsaINT0186518 @ hg38
Intron Retention
Gene
ENSG00000167377 | ZNF23
Description
zinc finger protein 23 [Source:HGNC Symbol;Acc:HGNC:13023]
Coordinates
chr16:71447597-71453350:-
Coord C1 exon
chr16:71453243-71453350
Coord A exon
chr16:71449883-71453242
Coord C2 exon
chr16:71447597-71449882
Length
3360 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
TTTTCTGTTTTTTATAGTAGATA
3' ss Score
6.16
Exon sequences
Seq C1 exon
GATTTCCACTTCTCAAACCTGCTGTGATCTCACAACTGGAGGGAGGAAGTGAGCTGGGGGGCTCATCTCCACTGGCTGCAGGAACAGGCCTCCAGGGCCTCCAGACTG
Seq A exon
GTAAGGGAGGTACATATTTCCCACTCTGTTGGAATTTAGCACTTTAGGCATAAAGCCAGCTTTAGCAACATATAAACATACTGTGTTTATTGGCCAGTCATACAGAGTGAAGTTTGAGTAAATTTTGATGATTCATAGAGATAGGTAGTCCTTATCTTTCTGTCTTCAAAGTTTGTTGTGTCTAATTCCAAGAACAGATCTTTTTTCAAACCCTTCATTCTGACTCTTCAATGCTAATTTTGGAATCCTGCCTTTCTCAGACAAAATTAAGGGACTCAGTAGTTTGGGGGTTCCTTGCCATTTCTAAGCATTATTCACATAGTGTGGAGGATACAGAATTAACAGCCTTTTCACACAGATAGAAGTGCTTAAAAGCACAGTCTTTAGAGGAGACTTTTCTGAGGTCCAGTCCCAACTGTGCTGCTTCCTAATTTGCGTGACTTTGAGTAGGTTATTTGAGTGTTCTCATCTCTGAAAATGGGTTAATAATAAAAGGAGGTAATAGTACTATCTTGTGGGTTGAGGTTTAAATGAGATAACACATATCAAATACCTAGCTTATAATGTGTGCTCAGTTCAGTATTTTTATTTTGGTTTTGGGGAATACAGCTGTACACAGGGAAGGTAATGTGGAAGGGAGGAAGTGCTCTTAATTTTTGCTTCTTAAATGTGAATGTGTAAAGGAATCCTGAGGTCTTACAGATATGCAGTAAGTGTGGAGTCTGCATTTCTATGAAGTTCCCTGGTGATGTGGCGATGCCAGTACTTCTGGTTACCAGACCACACTTGAAGGAGCAGGGCTCCAATTGGTGCCAGCAGAGTAGCTGCCAAATGACTTCTCATTCCCCCCGAGGCCCCCCGTTATTTCTTATATTTAGGGTCTGTGAGATTCTCTTGAATTTTTTCAGTGAGTCTTCATTTTTCTTAGATGGTTTCTGTAGGTTTTTATTCCTTTTGATCATTCTATCAGACGATATCTGACCAAAGAAGGCATGTTTTGGAAATGGAGTTTGCCGTATAATGGCCTTGACAAATATAGGGAAAAAAGTGATATTGTGAGGTCTTAATCAAAGGACCCTGTATTTTATTCTGTAGACAGCTGACTGTCCTGAAGTCTTTGACTTTTCCAGGAAACCCATCATGATCCTAGCTGGTGATAGAAACATTAATGTAGTCAGTGTGTGTGGGTTAATTGGGATGAGGAATCAAACAGGCTCTAGGCAGGCAGAAGGGAGGGCAAAGGGCATGAGGCCCATGGCAGCAGTGTTGACTTTCTTTTTAAAAATCTTCAGAAGCCCAGTCAGTGATACCTGTTTAAGACTCATTTGCTGTAACTGTGTCAAATGGCCATCCTCACTGCAAGAGAGGAAAGTGAAAACGAGAGATATTTCACCTATCATATTGAGAATAATTAAATTATATTCAATGTTGGTGAGAGTGCAGCAAAGCAGGAATAGACTTCTGGAGAGGATGACTAGACATCTGATAGTATAGATGTCTTAGTCAGTTTGGGCTACAATAACAGACTGCCATAGATTGGATGGCTTATAAACAACAGAAATTTATTTCATACAGTTCTAGTCCAAGATCAAGGTTCAGGCAGGTTCTGTCTGGCAAGGGCCTGCTTCCCGGCTAATAGACAGCTGTCTTCTCACTGTATCCTCACATGGTGGCAAGAAAGGGAGCTCTCTGGGCTCTTTTTTAAGGGCATTAATCCCATTCATGAGGGTTCTGCCATAGCTCAACCTCCTGATACAATCACATCAGGGGTTAGGACTTCAGAATATGAATTTGTGGGGAGGACAAACATTCAGTCTATAGCAACAGATGAGTATTATTTTTTTAGTTGGGAAGAGACCAGTATTATTTAGAAAGTGCTTGCTGGGGAATCCAGGCAATTGGAGGGGCTTATTGAGGGCAATTATGAAATACTGGGGCAGGGGGCATATTACATGTGGTTGAGGAGTGATGAAAGATGAAAAAATATGAGGCAGCATTTTGGGACTGAGCTTTTGAGAAAGTTGGGAACAAATGCAGAGATGAGTAGTTCTAGTTCTAAAGACTATTGGGATTATAAAAAGATTTTTAGGGAATGATCAAGTTTAGGATTAGAGGAAGAAGTGAAAGGAAAAGGCAAGGTTAATGCAGCAGTATTTGGAGGGGAATGGGAAGAAAGGGGATGAGATGGACCTCAAATAGAGCCTGTCTAAAGTAGAAATGAAGTTGAAGGACAAATTTTGGAAAGCCCACAGTTAATGTTCTAAGGAAAGAAACAAAATTATTTCCATTTTGCTCCCTGGTGCTGCTGACTGTTGTCATCTTCCAAGTTGCCATATTCTGTTGGATCCTGTGCCTTTTCCTTCTTCAGCATTTTCCATTTTTTTTTAAGTAAGGAACTGAGTGCTATAGGAACAACTAAGAAGAAACTGCAGGGTGTAGAAAAGCATGGTGTGATTAAAAGAATGCTGAGCTGGTGGACAAGACCTAGAATTTTATTCCACTACTGTCACTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCGCCCAAACTGGAGTGCAGTGGCAAGAACTTGGCTCACCGCAACTTCCGTTTCCCGGGTTCGAGCAATTCTCCTGCCTCATCCTCCCGAGTAGCTGGAACTACAGGCACGTACCACCACACCCGGCTAATTTTTTGTGGTTTAGTAGAGACGGGGTTTCACTGTGTTGCCCAGGCTGGTTGCAAACTCCCAAGCTCAGGCAATCTGCCTGCTTCAGCCTCCCAAAGTGTTGGGATTACAGGTGTGAGCTACCGTGCCCAGCTGTCACTTTTAACCTTCATGTGATTGGTTATGTTCTCTACAGTGGCCTTGTATTAGGCACAGTGGGAATGGTGATTTTTTTTTTATCATTACTTTCATTGCTTTTCATTACTTTCATAATATTGACACCTATTCAACAGTACAGAAAGTGTATAAAGTAGGGAAGCAAGTCCACTAAACTTCCTATGCCAGTTTATTTAGTTTCTTATGGATTCTTCTAGAAGTTTTCTAGGTATGTACAAATATATATATCTGTCTTTTATATTTTTCTTTACACAGCTGAAAATCTATTCTATATACTGTTTTTTCAACTTGTTTTTCCATTTGATTGTATCTTGGATGTCTTTTTACGTCAGCATATATGGATTTATTGTATTCTTTTACTAGTTAGTTACAAATTACTTATCCCACCTTATGGAGAAACCCTATGTTTTTTGACCTAGTCTGGTGATTTTAAGGAGCCCCCTGATTATTATGGTCTTTTATAGCACAGTTCTCTTCTTTTTCCTAACATGGTTCTTACATGACATTTTATGTTTTCTGTTTTTTATAGTAG
Seq C2 exon
ATATTCAGACTGACAATGATTTGACAAAGGAAATGTATGAAGGAAAAGAGAATGTATCATTTGAACTTCAAAGAGACTTTTCCCAGGAAACAGACTTTTCAGAAGCCTCTCTTCTAGAGAAACAACAGGAAGTCCACTCAGCAGGAAATATAAAGAAGGAGAAGAGCAACACCATTGATGGAACAGTGAAAGATGAGACAAGCCCCGTGGAGGAGTGTTTTTTTAGTCAAAGTTCAAACTCATATCAGTGTCATACCATCACTGGAGAGCAGCCCTCTGGGTGTACAGGATTGGGGAAATCCATCAGCTTTGATACAAAACTCGTGAAGCATGAAATAATTAATTCTGAGGAAAGACCTTTCAAATGTGAAGAATTAGTAGAGCCCTTTAGGTGTGACTCTCAACTTATTCAACATCAAGAGAACAACACTGAGGAAAAGCCTTATCAGTGTTCGGAGTGTGGCAAAGCTTTCAGCATTAATGAGAAATTAATTTGGCATCAGAGACTTCACAGTGGGGAGAAACCCTTCAAATGTGTGGAGTGTGGGAAAAGCTTCAGCTACAGTTCCCATTATATCACACATCAGACAATCCACAGTGGGGAGAAGCCCTATCAGTGTAAGATGTGTGGGAAGGCCTTCAGTGTTAATGGAAGCCTAAGTAGGCATCAGAGAATCCATACGGGAGAGAAGCCCTATCAGTGCAAGGAATGTGGAAATGGCTTCAGCTGTAGTTCTGCATATATTACACATCAGAGAGTCCACACTGGAGAGAAACCTTACGAGTGTAATGACTGTGGGAAAGCGTTCAATGTTAATGCAAAATTAATTCAACATCAGAGAATCCATACTGGAGAGAAACCTTATGAATGTAATGAATGTGGAAAAGGCTTCAGGTGCAGCTCCCAGCTTAGGCAGCATCAGAGCATCCACACAGGAGAAAAGCCCTATCAGTGTAAAGAGTGTGGAAAAGGCTTCAATAATAATACAAAACTCATTCAGCATCAGAGAATCCACACAGGTGAGAAACCCTATGAATGCACTGAATGTGGAAAAGCCTTCAGTGTCAAAGGGAAGTTAATCCAACACCAGAGAATTCACACAGGCGAGAAACCCTATGAGTGTAATGAATGCGGGAAAGCCTTCAGATGTAACTCCCAATTTCGGCAGCATCTGAGAATTCACACTGGGGAGAAGCCCTATGAGTGTAATGAGTGTGGAAAGGCCTTCAGCGTTAATGGGAAACTAATGCGGCATCAGAGAATTCACACTGGGGAGAAACCTTTTGAATGTAATGAGTGTGGGAGATGCTTTACTTCTAAAAGAAACCTACTTGATCATCACCGAATCCATACTGGAGAAAAGCCCTATCAATGTAAGGAATGTGGGAAAGCCTTCAGTATCAATGCCAAACTAACTAGGCATCAGAGGATACATACTGGGGAGAAACCTTTCAAATGTATGGAATGTGAGAAAGCATTCAGCTGTAGTTCTAACTATATTGTGCACCAGAGAATCCATACAGGAGAGAAACCCTTTCAGTGTAAGGAGTGTGGAAAAGCCTTCCATGTTAATGCCCATTTAATTCGGCATCAGAGAAGCCACACTGGGGAGAAACCCTTCAGATGTGTGGAATGTGGCAAAGGCTTCAGCTTTAGTTCTGACTACATTATACATCAGACAGTCCACACTTGGAAGAAACCCTATATGTGTAGTGTGTGTGGGAAAGCATTCAGGTTTAGCTTCCAGCTCAGTCAGCATCAGAGTGTCCATAGTGAAGGAAAATCCTAATAATGAGAAAGATATAGAAAACTCTTAAGGTTAATGCCAAAATGGATCAAGTATCATCAGATTCATCCATTGAAAAACCTCCAAGAGGGCATGAATATGGCAGAGTCTTCATATGGAAACAGTTTTTATTCTATTCAGTTTAAATCAGGAAAGGATGACCAGTTAAAGAGAAACATCCAAAAATAGCTTTGTTTTGTACCAACAGGAATTAGAAAATATAATGAAAAGATTTCGTTCCCAGCAGCATCAAGAAAAGTAGATTTTCTAGAAATAAACAGTTATGGAGGACTTGTATGGAGAAATTTAAGTCTTCACTGAGGGCCACTTTACAAAGGAAATTTGAATAAATGGAGAGAGAGAGAAGCCTTGTTGTTGGATAGGAAAACCCGTACTAAAGATACTCTACCTACATTAATTTATTTGTTTAATTTTTGACAACAAGCATGTATTACTTTTGAAAAGATGAAAAATAAAGATTTATTTAAAAAAGGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167377:ENST00000393539:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.383 A=NA C2=0.099
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF079757=C1_4=WD(100=7.7),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF0009621=zf-C2H2=WD(100=3.9)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains