HsaINT0186518 @ hg19
Intron Retention
Gene
ENSG00000167377 | ZNF23
Description
zinc finger protein 23 (KOX 16) [Source:HGNC Symbol;Acc:13023]
Coordinates
chr16:71481503-71487253:-
Coord C1 exon
chr16:71487146-71487253
Coord A exon
chr16:71483786-71487145
Coord C2 exon
chr16:71481503-71483785
Length
3360 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
TTTTCTGTTTTTTATAGTAGATA
3' ss Score
6.16
Exon sequences
Seq C1 exon
GATTTCCACTTCTCAAACCTGCTGTGATCTCACAACTGGAGGGAGGAAGTGAGCTGGGGGGCTCATCTCCACTGGCTGCAGGAACAGGCCTCCAGGGCCTCCAGACTG
Seq A exon
GTAAGGGAGGTACATATTTCCCACTCTGTTGGAATTTAGCACTTTAGGCATAAAGCCAGCTTTAGCAACATATAAACATACTGTGTTTATTGGCCAGTCATACAGAGTGAAGTTTGAGTAAATTTTGATGATTCATAGAGATAGGTAGTCCTTATCTTTCTGTCTTCAAAGTTTGTTGTGTCTAATTCCAAGAACAGATCTTTTTTCAAACCCTTCATTCTGACTCTTCAATGCTAATTTTGGAATCCTGCCTTTCTCAGACAAAATTAAGGGACTCAGTAGTTTGGGGGTTCCTTGCCATTTCTAAGCATTATTCACATAGTGTGGAGGATACAGAATTAACAGCCTTTTCACACAGATAGAAGTGCTTAAAAGCACAGTCTTTAGAGGAGACTTTTCTGAGGTCCAGTCCCAACTGTGCTGCTTCCTAATTTGCGTGACTTTGAGTAGGTTATTTGAGTGTTCTCATCTCTGAAAATGGGTTAATAATAAAAGGAGGTAATAGTACTATCTTGTGGGTTGAGGTTTAAATGAGATAACACATATCAAATACCTAGCTTATAATGTGTGCTCAGTTCAGTATTTTTATTTTGGTTTTGGGGAATACAGCTGTACACAGGGAAGGTAATGTGGAAGGGAGGAAGTGCTCTTAATTTTTGCTTCTTAAATGTGAATGTGTAAAGGAATCCTGAGGTCTTACAGATATGCAGTAAGTGTGGAGTCTGCATTTCTATGAAGTTCCCTGGTGATGTGGCGATGCCAGTACTTCTGGTTACCAGACCACACTTGAAGGAGCAGGGCTCCAATTGGTGCCAGCAGAGTAGCTGCCAAATGACTTCTCATTCCCCCCGAGGCCCCCCGTTATTTCTTATATTTAGGGTCTGTGAGATTCTCTTGAATTTTTTCAGTGAGTCTTCATTTTTCTTAGATGGTTTCTGTAGGTTTTTATTCCTTTTGATCATTCTATCAGACGATATCTGACCAAAGAAGGCATGTTTTGGAAATGGAGTTTGCCGTATAATGGCCTTGACAAATATAGGGAAAAAAGTGATATTGTGAGGTCTTAATCAAAGGACCCTGTATTTTATTCTGTAGACAGCTGACTGTCCTGAAGTCTTTGACTTTTCCAGGAAACCCATCATGATCCTAGCTGGTGATAGAAACATTAATGTAGTCAGTGTGTGTGGGTTAATTGGGATGAGGAATCAAACAGGCTCTAGGCAGGCAGAAGGGAGGGCAAAGGGCATGAGGCCCATGGCAGCAGTGTTGACTTTCTTTTTAAAAATCTTCAGAAGCCCAGTCAGTGATACCTGTTTAAGACTCATTTGCTGTAACTGTGTCAAATGGCCATCCTCACTGCAAGAGAGGAAAGTGAAAACGAGAGATATTTCACCTATCATATTGAGAATAATTAAATTATATTCAATGTTGGTGAGAGTGCAGCAAAGCAGGAATAGACTTCTGGAGAGGATGACTAGACATCTGATAGTATAGATGTCTTAGTCAGTTTGGGCTACAATAACAGACTGCCATAGATTGGATGGCTTATAAACAACAGAAATTTATTTCATACAGTTCTAGTCCAAGATCAAGGTTCAGGCAGGTTCTGTCTGGCAAGGGCCTGCTTCCCGGCTAATAGACAGCTGTCTTCTCACTGTATCCTCACATGGTGGCAAGAAAGGGAGCTCTCTGGGCTCTTTTTTAAGGGCATTAATCCCATTCATGAGGGTTCTGCCATAGCTCAACCTCCTGATACAATCACATCAGGGGTTAGGACTTCAGAATATGAATTTGTGGGGAGGACAAACATTCAGTCTATAGCAACAGATGAGTATTATTTTTTTAGTTGGGAAGAGACCAGTATTATTTAGAAAGTGCTTGCTGGGGAATCCAGGCAATTGGAGGGGCTTATTGAGGGCAATTATGAAATACTGGGGCAGGGGGCATATTACATGTGGTTGAGGAGTGATGAAAGATGAAAAAATATGAGGCAGCATTTTGGGACTGAGCTTTTGAGAAAGTTGGGAACAAATGCAGAGATGAGTAGTTCTAGTTCTAAAGACTATTGGGATTATAAAAAGATTTTTAGGGAATGATCAAGTTTAGGATTAGAGGAAGAAGTGAAAGGAAAAGGCAAGGTTAATGCAGCAGTATTTGGAGGGGAATGGGAAGAAAGGGGATGAGATGGACCTCAAATAGAGCCTGTCTAAAGTAGAAATGAAGTTGAAGGACAAATTTTGGAAAGCCCACAGTTAATGTTCTAAGGAAAGAAACAAAATTATTTCCATTTTGCTCCCTGGTGCTGCTGACTGTTGTCATCTTCCAAGTTGCCATATTCTGTTGGATCCTGTGCCTTTTCCTTCTTCAGCATTTTCCATTTTTTTTTAAGTAAGGAACTGAGTGCTATAGGAACAACTAAGAAGAAACTGCAGGGTGTAGAAAAGCATGGTGTGATTAAAAGAATGCTGAGCTGGTGGACAAGACCTAGAATTTTATTCCACTACTGTCACTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCGCCCAAACTGGAGTGCAGTGGCAAGAACTTGGCTCACCGCAACTTCCGTTTCCCGGGTTCGAGCAATTCTCCTGCCTCATCCTCCCGAGTAGCTGGAACTACAGGCACGTACCACCACACCCGGCTAATTTTTTGTGGTTTAGTAGAGACGGGGTTTCACTGTGTTGCCCAGGCTGGTTGCAAACTCCCAAGCTCAGGCAATCTGCCTGCTTCAGCCTCCCAAAGTGTTGGGATTACAGGTGTGAGCTACCGTGCCCAGCTGTCACTTTTAACCTTCATGTGATTGGTTATGTTCTCTACAGTGGCCTTGTATTAGGCACAGTGGGAATGGTGATTTTTTTTTTATCATTACTTTCATTGCTTTTCATTACTTTCATAATATTGACACCTATTCAACAGTACAGAAAGTGTATAAAGTAGGGAAGCAAGTCCACTAAACTTCCTATGCCAGTTTATTTAGTTTCTTATGGATTCTTCTAGAAGTTTTCTAGGTATGTACAAATATATATATCTGTCTTTTATATTTTTCTTTACACAGCTGAAAATCTATTCTATATACTGTTTTTTCAACTTGTTTTTCCATTTGATTGTATCTTGGATGTCTTTTTACGTCAGCATATATGGATTTATTGTATTCTTTTACTAGTTAGTTACAAATTACTTATCCCACCTTATGGAGAAACCCTATGTTTTTTGACCTAGTCTGGTGATTTTAAGGAGCCCCCTGATTATTATGGTCTTTTATAGCACAGTTCTCTTCTTTTTCCTAACATGGTTCTTACATGACATTTTATGTTTTCTGTTTTTTATAGTAG
Seq C2 exon
ATATTCAGACTGACAATGATTTGACAAAGGAAATGTATGAAGGAAAAGAGAATGTATCATTTGAACTTCAAAGAGACTTTTCCCAGGAAACAGACTTTTCAGAAGCCTCTCTTCTAGAGAAACAACAGGAAGTCCACTCAGCAGGAAATATAAAGAAGGAGAAGAGCAACACCATTGATGGAACAGTGAAAGATGAGACAAGCCCCGTGGAGGAGTGTTTTTTTAGTCAAAGTTCAAACTCATATCAGTGTCATACCATCACTGGAGAGCAGCCCTCTGGGTGTACAGGATTGGGGAAATCCATCAGCTTTGATACAAAACTCGTGAAGCATGAAATAATTAATTCTGAGGAAAGACCTTTCAAATGTGAAGAATTAGTAGAGCCCTTTAGGTGTGACTCTCAACTTATTCAACATCAAGAGAACAACACTGAGGAAAAGCCTTATCAGTGTTCGGAGTGTGGCAAAGCTTTCAGCATTAATGAGAAATTAATTTGGCATCAGAGACTTCACAGTGGGGAGAAACCCTTCAAATGTGTGGAGTGTGGGAAAAGCTTCAGCTACAGTTCCCATTATATCACACATCAGACAATCCACAGTGGGGAGAAGCCCTATCAGTGTAAGATGTGTGGGAAGGCCTTCAGTGTTAATGGAAGCCTAAGTAGGCATCAGAGAATCCATACGGGAGAGAAGCCCTATCAGTGCAAGGAATGTGGAAATGGCTTCAGCTGTAGTTCTGCATATATTACACATCAGAGAGTCCACACTGGAGAGAAACCTTACGAGTGTAATGACTGTGGGAAAGCGTTCAATGTTAATGCAAAATTAATTCAACATCAGAGAATCCATACTGGAGAGAAACCTTATGAATGTAATGAATGTGGAAAAGGCTTCAGGTGCAGCTCCCAGCTTAGGCAGCATCAGAGCATCCACACAGGAGAAAAGCCCTATCAGTGTAAAGAGTGTGGAAAAGGCTTCAATAATAATACAAAACTCATTCAGCATCAGAGAATCCACACAGGTGAGAAACCCTATGAATGCACTGAATGTGGAAAAGCCTTCAGTGTCAAAGGGAAGTTAATCCAACACCAGAGAATTCACACAGGCGAGAAACCCTATGAGTGTAATGAATGCGGGAAAGCCTTCAGATGTAACTCCCAATTTCGGCAGCATCTGAGAATTCACACTGGGGAGAAGCCCTATGAGTGTAATGAGTGTGGAAAGGCCTTCAGCGTTAATGGGAAACTAATGCGGCATCAGAGAATTCACACTGGGGAGAAACCTTTTGAATGTAATGAGTGTGGGAGATGCTTTACTTCTAAAAGAAACCTACTTGATCATCACCGAATCCATACTGGAGAAAAGCCCTATCAATGTAAGGAATGTGGGAAAGCCTTCAGTATCAATGCCAAACTAACTAGGCATCAGAGGATACATACTGGGGAGAAACCTTTCAAATGTATGGAATGTGAGAAAGCATTCAGCTGTAGTTCTAACTATATTGTGCACCAGAGAATCCATACAGGAGAGAAACCCTTTCAGTGTAAGGAGTGTGGAAAAGCCTTCCATGTTAATGCCCATTTAATTCGGCATCAGAGAAGCCACACTGGGGAGAAACCCTTCAGATGTGTGGAATGTGGCAAAGGCTTCAGCTTTAGTTCTGACTACATTATACATCAGACAGTCCACACTTGGAAGAAACCCTATATGTGTAGTGTGTGTGGGAAAGCATTCAGGTTTAGCTTCCAGCTCAGTCAGCATCAGAGTGTCCATAGTGAAGGAAAATCCTAATAATGAGAAAGATATAGAAAACTCTTAAGGTTAATGCCAAAATGGATCAAGTATCATCAGATTCATCCATTGAAAAACCTCCAAGAGGGCATGAATATGGCAGAGTCTTCATATGGAAACAGTTTTTATTCTATTCAGTTTAAATCAGGAAAGGATGACCAGTTAAAGAGAAACATCCAAAAATAGCTTTGTTTTGTACCAACAGGAATTAGAAAATATAATGAAAAGATTTCGTTCCCAGCAGCATCAAGAAAAGTAGATTTTCTAGAAATAAACAGTTATGGAGGACTTGTATGGAGAAATTTAAGTCTTCACTGAGGGCCACTTTACAAAGGAAATTTGAATAAATGGAGAGAGAGAGAAGCCTTGTTGTTGGATAGGAAAACCCGTACTAAAGATACTCTACCTACATTAATTTATTTGTTTAATTTTTGACAACAAGCATGTATTACTTTTGAAAAGATGAAAAATAAAGATTTATTTAAAAAAGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167377-ZNF23:NM_145911:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.622 A=NA C2=0.099
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF079757=C1_4=WD(100=7.7),PF134651=zf-H2C2_2=WD(100=4.2),PF127602=Zn_Tnp_IS1595=WD(100=9.9),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF097235=Zn-ribbon_8=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF0009621=zf-C2H2=WD(100=3.9)
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)