RnoINT0168469 @ rn6
Intron Retention
Gene
ENSRNOG00000016971 | Zfp612
Description
zinc finger protein 612 [Source:RGD Symbol;Acc:1307197]
Coordinates
chr19:41559487-41565420:-
Coord C1 exon
chr19:41565313-41565420
Coord A exon
chr19:41561247-41565312
Coord C2 exon
chr19:41559487-41561246
Length
4066 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
TTTTTTACTTCTTTTGGTAGAAT
3' ss Score
6.97
Exon sequences
Seq C1 exon
GATTTCCACTTCTCAAACCTGCTGTGATCTCACAGCTAGAGGAAGGAGAGGATCTGGAAAGCCTGTCTCAGCTGGCCACTGGAACAGACTCCCAGGGCCTCTGGACTG
Seq A exon
GTAAGGGAGGCCCACTGCCCAACAACATACGTGTGTGCCGCATTTCCACATTACAGCGATGCGTGTTCCCAGATGCCGAATTCTGTCTCCAACCCCATCATTCTCAAACAAGACTATGGATTTCGTGATTTGGGGGGTGGAAGTCCTTAACGTTTTTGAGCATTGCCACTAAAAGTGGAGGATATAGCTTTAACAACCTTTTTACACAGGGGCAGAAATACCTAAAGCTACAGGCTTTGCTGTGCTATGATGCCATGTGTTTTTGTGAGGAACTGCAGGTCAGTTATTTGAGGTCTCAGTGTCCAGTGAATTAATCTCTGAAACCGTGGTAACAATGAAGGGAAACAGTGGTGCCACTCTGGGCACAAGGCCAGCGTGATAACCTACATCAGGGGTCTAGCTTAGTTAGATTATCATTGTGCATACATAAACGTGCCCCTATTCCACACATCTTGAGTGTTATGTACATTCAATGATGTGTACGTGATTACTTGCAATACTTAGAGGTGCAGACTGTCAGTAGGTCTTGGGCCAGCCAAGTGTCTGCGCTTGCATTCATACTGTAAGGCCCTTAATCAGTTCAGTTCTCATTCTGTACGCCACAGCTAATCTCATTTGTTGGCAAAAAATGAGACAGGCTGTGGGTAGCAGAAGGAGGTGGGCGCATAAGGACTGTGGTAGCAGGAGAACTCTACAGAACAAAACAAAAGGCCTTTTTCATAGCTCAACCCGTGGTTTCTATGAACTCTTACTTGTAGGACCTTAGATCCTTTATGAAAGAGAAGCTGGAAAATAAGATTTGGGTGGGCAGCTCAGTACTTCAAGAAGTTAAATGGAAGGCATGTTAGTAAAGACGAAGTGGACACTGATATTAACGTGTGCTATACCATAGGGTTTGGAAGGTTGCTAATAAAAATTGGTAAAAGAGTCGTCGTTGATCTCCGTGACACATACAAATGTAAATCAATCTGAAAAATATCTATCCCTAGAAACTAAAGAGAAACGATTCCTACTAATGCAAGAAGGTGCGGGGTGCAGCATAGTGGAAGAGTGTTTCCTTAGAATGCATGAGGGCCTGGGTTGATCTTTACTGTGAAAGGCTGTGCTGGTGAGAGAATACTCACCTGTCAGAGACCCAGTACAGTCAAATGTTATCGAGGTAGCAAGACAGACAGGACTGGTGGAGGGAGGTAAATTGGTAGCCTTTCTACAAGAAAAGTTGCTGCCTGGTAACCTGCATACCAGCTTCTATAGCTGAGGATGCATAAGTAATGAGGCTCTTCTCAGAGATGCCTTGATGCACTTGAGCACCAAGTCAGTGGAAACAATCTGTTTTCTGTATAATGAGAATGGCTAAGTTCAGGTACTCCTGCGGGCTGGAAGAGTATTTAGAGATTAAGCTATTTTTGCAGTCTTTAAAAAATATTAGAAAATGTTTATCACTAAAGGAAGGAAAAAATCTAGTTTTGAAAAAGTAAAAAGAAAAAGGTGTTTAAAAGATTAGCATATGTTCATTTCAGGCACCCGGTAGCTCACGTTTTGGAAAGGAGAACTGAATTGCTAAGTTTCTGGTAACTGTGGATGTCTTCTGAACTGTTGGAACAGAGCATAGCTTGAGTGGTTTATAAACAACATAGTCTGCATCTTTCATATGCCTTAGTTTGGGCTGCTATAACAGTACCTTGGATGGCTTTTAAGAACATAAATTTATTCTTCCAGTTTTGGAGGTTGGAAGTCCAAGGTGAAGGTGCAGATGGACTGAGTGCTCGACCAGGACCTGTTTGCAGATGAATAGACAGCTATTTGTCCTCTTGCTAAGCCCTCATAAGGAGAAGGGGAAAGAACTTTACCAGATCTCTTAACACATTAAGTTCATCATAAGCATTCTGCCAGAGTTCTCCCTCCTAATAGTGAGTGGTGGGGATGGACAGCAACAAACGTTGGATCTAGAGCAACATTATTTTTAACTTTGAAAAGGCTCATGTTGTTTTAAATCCTTTCTAGAGGAGCCCAGGTTACTTATGTTGTTGAGAATAATTTTAGTGAAGTAGTAAGGCACGTTCCTTTTTTTTTTCTTTTTATTTGTTCTTATACAATACATCCCAATTGTAGCTTCCCCTTCCTCCACTCCTCCCAGCTCCTCCCCCAGATCCACTGTTCCCTTGTTCCTCTTCAGAAGAGAGCAGGCCTCCCAGTGATAGTGAGTGAACATGGTGTAGCAAGATGCACTAACAGTAAACACAAACCCTCACATCAAGGCTGGATGAGGCAACCCAGTAGGAGGAAAAGGGTCCTAAGAGCAAGCAATAGAATTAGAGACCCCTATTCCCACTGTTAGGAGTCCCACAAAATCCCCAAGCTAAAAGACCATAGCATGTATGCAGAGGACCCAGTGCAGACCCATGCAGGCTCTGTGATTGCCACTTTAGTCTCTGAGCCCCTAGGAGCCATGCTTAGTTGATTCTGTGGGCTGTGTTCTTCTGGTGTCCCCACCATTCTGGTTCCTATAATCCTCCCTCTTTTGCTGGGTCCCCCAACCCCCAGCTCTGCCTAATATTTGGCTATGGGTCTCTGCATCTGCCAGAGTAAGCCTCTGTGATGCCAATGGGGCTAGGCAACACCTATGAGTATAGCAGAATATTATTAGAAATTACTTCGTTGACTTTTTTTTTTTCCTCAGTCATGTTTGGTTCTACCCTAAGTCTCTGAGCCATCCAACTTCCAGTTCCTGGCCATCCTGGAACTGTAGTGTTGGGTATGGGCTCCGTTTTGAGGCTTGGGCCTCAACTTAGACCAGTCATTGGTTGGCCACTCCCACAACTCTGAGCCACCACTGCCCCAGTACATCTTACAGGCAGGATAGGTGTGGGTTGAAGGTTTTGTGGCTGGATTGGTGTCCCCGTCCCTCCGCTGGAAACCTTTTCTGGTTACAGATGGTGGAAGGGCATGTTTTATGTGGTCAGGAGGAAATGAGAGATGGAAAAATAAAGGATGCTTTTGGGGGAGGGATTTGAGAAGTGGAGAGGTCAGGTCTGTAAAATTATGATTATAAAAGAATGTTTAGAGATGATCAGTTTTTAGGATCGATGGAAATAAATTTTGTACAACAGTTATTTTAGAGGAGATAGGAAGAGGTGTGGTCGGGTGGGCTTTAACAGAGCTTTTCAAGAAGGCTGAAGTTGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAAAAAAAAAAAAAGAAGGCTGAAGTTAAGCTCTAGGGAAACAAGCCCAGTTCTTCTGTTTCCTCTGCTGATGTCTGTCAGACCCAGGCCTGCAGCATGTCCTTAGACCCTCTACCTTTCCTTTGTTAATCATTTCCTGCTTTTATAAGGAGCTGGATCCCTCAGGACAACCAAGAGGGAACTGTAGAGTGTAGGAAAGTGTGAGATAATGGGAAAGACTGATCTGATGGACAAGACCATGAGTTTTCTTCCCCACTGCCACATTTGTTTAACCTTTGTTACTGCTGTTACCTTGCAGGGCCCTTGCCCTGCGAGAGTATGAATGGGGGTCGGTGGGGTGAGGTGGTCTCATAGCTGTTCTTACTCAGAAGTTTTCTGACACAGATATACATGTTCTTGTCCACTCTTCTCATTCTTCACAGTTGGAATCTCCTTTGGTTTCTATTTCTTATTTTTTTTTTTTTTACTTTAAAGTATATCTTGGTCATCTTCTCATGGTCTACATACCTGGATCTATTTCCTTTCTTTACCAATGACAATTACACCTTATGGATGAACCTTTGGTTATTTGACCTAGCCTAGTGATTTATAGAGCCTTTTAGAGCATGGCATGTTGACATACACATGTAATTCTACCCCTTATGAAGTAGGTACAGGAGAATCAGTAGTTCAAAGCCAGCCTAGGCAACATATTGAGACTATATGTAAAAAATAGCTTTCTAATTATTATATTCTCTTCCAACATGATTATATGACATATTTTATTATTTTTTACTTCTTTTGGTAG
Seq C2 exon
AATGTACTGCTATCCAGACTGGCATTAATTTGACAAAAGACGTGTATGAAGAGAAAAAGAATACATTATTTGAACTTCAGAAGGACTTTTCTCAGGAAACACACTTTTCAAAAACTTATATTGTTGGCCAACAGCAGGAAACGCAGTCAGCAGGAAGTGAGAGGGAGAGTGTCAGCGCCTCCAATGGAAGAGCTAAGACAAGCCCCGTGGAAGGGCATTTACCTAGTCCCATGCCACACTTGTCTCAGGACCATGCCAGCTCTGCTGGAGAGCAGTACTCTGACACCAAACTTACTAAGAATGAGAAAATTACTGCACAGGAAACACCTTTGAAACACAAAGAATTAGCAGAGGCTTCTCAGGGTAGCTCTCAAGTTAATCAGCTTCCAGAAAGCTGTGATGTGGAGAAGCCCTATCAGTGTACAGAATGTGGCAAAGCCTTCAGTGTTAAAGCCAAGTTTGTTTGGCATCAAAGACTTCATAATGGAGAGAAACCTTTCAAATGTGTGGAGTGTGGGAAATGCTTTAGCTACAGTTCACACTATATCACACATCAGACAATCCACAGTGGAGAAAAGCCGTACCAGTGTAAGGTGTGTGGCAAAGCCTTCAGTGTTAACGGAAGTCTCGTTAGACATCAGAGGATACACACAGGAGAGAAGCCCTATCAGTGCAAGGAGTGTGGGACTGGCTTCGGTTGTAGTTCTGCATACATTACTCACCAGAGAACCCACACTGGGGAGAAACCTTACGAGTGCAGTGACTGTGGGAAAGCTTTCAATGTTAACGCCAAATTGATTCAGCATCAAAGAATCCATACTGGAGAGAAGCCTTATGAATGTGATGTGTGCGGAAAGGGCTTCAGGTGCAGCACCCAGCTTAGGCAGCATCAGAGTATACACACTGGAGAGAAGCCGCATCGCTGTAGTGAGTGTGGGAAAGGCTTCACTAAAAATGCAAAGCTCATTCAACACCAAAGAGTGCACACGGGTGAGAAACCCTATGCGTGCAGTGACTGTGGAAAGACTTTTAGTGCCAAAGGGAAGTTAATCCAGCACCAGAGAATCCACACAGGTGAGAGACCTTATGAATGTAGTGAGTGTGGGAAATCCTTTAGGTGTAACTCCCAGCTTCGGCAGCATCTGAGAATCCATACTGGGGAGAAGCCATATAAATGCAATGAGTGTGGAAAGGCCTTCAACGTTAATGCAAAGCTAATGCAGCACCGGAGAACTCACACTGGGGAGAAGCCGTTTGAATGCAATGAATGTGGGAAGTGCTTTACATCTAAAAGGAACCTGCTTGATCACCAGCGAACCCATACTGGAGAGAAGCCATATCAGTGTAAGGAGTGTGGGAAAGCTTTCAGTATCAATGCGAAGTTAACTAGACATCAGCAAATACACACCAGGGAGAAACCTTTCAAGTGTATGGAATGTGAGAAAGCATTCAGCTGTAGTTCTGACTATATTGTGCATCAGAGAATCCATACTGGAGAGAAACCCTTTCAGTGCAGCGAGTGTGGTAAAGCCTTCCATGTCAATGCTCATTTAATTAGACACCAGAGAAGCCATACTGGGGAAAAGCCTTTCCGATGCATGGAGTGTGGCAAGGGCTTCAGCCTTAGTTCTGATTGTATTATACATCAGACTGTCCATACTTGGAAGAAACCCTATGTATGTAACATATGTGGGAAAACTTTCAGGTTTAGCTTCCAACTTAGTCAGCACCAAGATGTTCACAATGAAGACAAATCCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016971:ENSRNOT00000022757:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.162 A=NA C2=0.181
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF0009621=zf-C2H2=WD(100=3.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]