HsaINT0186517 @ hg19
Intron Retention
Gene
ENSG00000167377 | ZNF23
Description
zinc finger protein 23 (KOX 16) [Source:HGNC Symbol;Acc:13023]
Coordinates
chr16:71487146-71488121:-
Coord C1 exon
chr16:71487945-71488121
Coord A exon
chr16:71487254-71487944
Coord C2 exon
chr16:71487146-71487253
Length
691 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
ATTTACCTCTCCCAAACCAGGAT
3' ss Score
7.53
Exon sequences
Seq C1 exon
GGCCTGAGCTATGGAATTGGCCCTAGGGCAGCAGGAACCTATTGTTTCAGAAGTCGGTGACCTTTGAGGACGTGGCTGTGTACTTCACCCAGGCGGAATGGGATGGCCTGTCCCCTGCACAGAGGACCCTGTACAGGGATGTGATGCTGGAGAATTATGGGAATGTGGCCTCCCTGG
Seq A exon
GTAAGACCTCTCTACCCTGGGAACCTGGAATCTGCCAATTGGGGTTCCTGGCTTGCTTCTCCCTTACAGGTTACTGAGGGGATCTCTGGTAATCCTTTACTGAGTGAGAACCCCAGAGCTGTTCCTAATCTAGACTTAGAGGTTACTGGCAGGGGCAAATGCCAAGCCTTTTGTAGGCCTATATAGGACTTTGCTTGGAACTGGTATGCACTGTTGATCCAACCCATGAAAGCTATGTTTTGGAAACACTGGAATCCAGTTGCTTCCTGTTCCACAGTGGCATCTTCAGTTGCCCCCTCATCTTACCTGTCTTGAGTCTTTTCAAGGATCTCAGTGTACTCTGGATTATTTCAGGCCAAGGTCAAAAAGTGGTATCCCTTTGGGCAGAATCTCCCTGCTTGCCCTGCATGAGGTCTCCTAGGCCTACAGTCTGGGCCCTAACCAGGCTCTCCCACACGTTCCCAAGCCTTCACCCCCAACCCCCACATTTGCCTCCCAAAGCCCTTGGAAGTCTCCAAGGTCTCTTTAGTCCTTCCTAAGCCCCACAGTACTTTCCCGTAGTCCTGAGGCTTGGGACCTCCTGGGGTTCTTACCTTCCCTCCCCATTGCTGAGACAGTCTGAGAAGAGGCTTAGGAATTTGTCTGTGGGAGTTTATTCATCTGTCTCTCCTATTTACCTCTCCCAAACCAG
Seq C2 exon
GATTTCCACTTCTCAAACCTGCTGTGATCTCACAACTGGAGGGAGGAAGTGAGCTGGGGGGCTCATCTCCACTGGCTGCAGGAACAGGCCTCCAGGGCCTCCAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167377-ZNF23:NM_145911:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.622
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGCTATGGAATTGGCCC
R:
CAGTCTGGAGGCCCTGGAG
Band lengths:
283-974
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)