BtaINT0165004 @ bosTau6
Intron Retention
Gene
ENSBTAG00000032018 | ZNF19
Description
Bos taurus zinc finger protein 19 (ZNF19), mRNA. [Source:RefSeq mRNA;Acc:NM_001083460]
Coordinates
chr18:39730642-39731426:+
Coord C1 exon
chr18:39730642-39730768
Coord A exon
chr18:39730769-39731312
Coord C2 exon
chr18:39731313-39731426
Length
544 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CCATTTTCTGCCCTTTTCAGGAT
3' ss Score
12.18
Exon sequences
Seq C1 exon
GAGGTAGTGACCTTTGAGGATGTGGCTGTTTACTTCACCCGGACAGAATGGGCTGGCCTTTCTCCTGCACAAAGGGCCCTGTACAGAAGTGTGATGCTGGAGATCTATAGGAGCTTGACATCCTTGG
Seq A exon
GTAAGGCTGCTTTTCTCTTGGTGCTCAGATCTGTGCTTTCCTGTTTCCTTTTTTCCTCCTTATCAGCCAGGGGTGTGGTGTGGAAAGTGGGGAGTTATCTCTTATACCCTCCATGGTCCTGGGACTGAGACCAAATGACCCACTTGAGAGGTATTGGGTAAGTCTTGGGTCAGTTTGGTCCCAATGTAGGGAATTGTTGTCGCCTGGTATGAGTATGCTCCATCCTCCCAGGGCCTCTGCAGGGTAAGTAGTGTCTGTTGTTAGATAAGTTTTCGCCTTACTTTTGTCTCCCTGTAGTCTAGGGAAGGGTATGACCCCTTCCCTTTGTTTGCATATGTCCCTCAGGATCACTAACTTACTCGTGGGTCTAGTTTTAGGAAGCGATCACAAATGCTTATTTTCCACTTAAGCAAAAATCTTGGCTTTCCCCAGTCCTGAGCCCTTTACTGTGGATCTGTTCTAGTCTCACTGAGAGTCTTGAGCTTTTCATTCTTTTGACACAGCAGACACAGGACTGACAGGTGCCATTTTCTGCCCTTTTCAG
Seq C2 exon
GATACCCAGTTCCCAAACCTGCGTTAATCTCACTTCTAGAGAGAGGGGATTTGCCTGTGGGCCTGGAGACACAGGATAATCCTCCTGCACAGGGTACCAGAGACATCTATAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032018:ENSBTAT00000021082:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.385
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGTGACCTTTGAGGATGTGG
R:
TTTATAGATGTCTCTGGTACCCTGTG
Band lengths:
238-782
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development