HsaINT0186380 @ hg38
Intron Retention
Gene
ENSG00000157429 | ZNF19
Description
zinc finger protein 19 [Source:HGNC Symbol;Acc:HGNC:12981]
Coordinates
chr16:71478228-71479005:-
Coord C1 exon
chr16:71478879-71479005
Coord A exon
chr16:71478342-71478878
Coord C2 exon
chr16:71478228-71478341
Length
537 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CATTTTCTTCCTGTTTTCAGGGT
3' ss Score
11.23
Exon sequences
Seq C1 exon
GAGATGGTGACCTTCGAGGATGTGGCTGTGCACTTCACCAAGACAGAATGGACTGGCCTTTCTCCTGCCCAGAGGGCCCTGTACAGAAGTGTGATGTTGGAGAATTTTGGGAACCTGACTGCTTTGG
Seq A exon
GTAAGGCCATTTTCCTCCTAGGACTCAGATCTGTACTTTTCCAGTTTCCTTCCTTCTTTTACAGCCTGGGGGGAGGAGTGTGGAGTGGAGAGGAGAGGTTGTCTCTTGTGTCCTCCACTGAGTGACTGCAGAGCTGAGGCTCAGTGACCAACTTCAAAGATTGCTGGGTAGGGAGAGGTCTTGGGTCACTTTGGTCTCCCAATGAAGGGAATTACTGTCCCCTGGTAAGAGTATGTTCCATCTTCCAAGAGGCTCTGCACAGTAAGGAATAAGTAGTAGTTGTTGTCTGGGGAAGGGCATGTCCCCTTCCCTGTGTTTGCTCATGCCTTGTGGATCTCACTGACTTACTTATCCTTGAGTGTTTTTTTTAGGAAGAAGTCACAAATGCTCAGTTTCCTGTTGATCGGAATCTCTTTGGCCTTCTCCAGTCGAGAACCCTCTTCTGTGGGTCTTATTCTTACTGAGACTCCTGGGGTTTTCCTTCTTTTGACACAGCAGATACAGGGCTGAAAAGTACCATTTTCTTCCTGTTTTCAG
Seq C2 exon
GGTACCCAGTTCCCAAACCTGCACTGATCTCACTTTTGGAGAGAGGGGACATGGCTTGGGGCCTGGAAGCACAGGATGATCCCCCAGCAGAGAGGACCAAAAACGTCTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157429:ENST00000288177:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.487
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGGTGACCTTCGAGGATGT
R:
TTACAGACGTTTTTGGTCCTCTCTG
Band lengths:
238-775
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains