BtaINT0009572 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MWP3]
Coordinates
chr18:60122627-60123525:-
Coord C1 exon
chr18:60123399-60123525
Coord A exon
chr18:60122722-60123398
Coord C2 exon
chr18:60122627-60122721
Length
677 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
CTTTGTTTTTGATAAAGCAGTAA
3' ss Score
-0.06
Exon sequences
Seq C1 exon
GAACAGTTGACTTTCGAGGATGTGGCCATTGACTTCTCTCTGGAAGAGTGGGAATGCCTGGACCCTGCTCAGAGGGCCTTGTACAGGGACGTGATGGTGGAGACCTATAGGAACCTGTTCTCCCTGG
Seq A exon
GTGAGGATGAATTCTGTGTAGAAGTTGGTATCTGCCCTTTTGTGTTGTGTGTTTTCCCCTGTGGACCTCTTGGACTCAGACATGATGGAGCATCACAAGTTTAAACTGACCCTTTTTTCAGATGATGATATCCGTTTCATGTTACATCAGAGGTTGAGGTTGTTCCAGAGCTTAATTATGTATAAAGCCCAATGGCAGATTTTAAAAAAATATCTGATATCCTGCTTCCTACCCTTTGCTTCTAATTCAATATTTATTGGAAGAGTGTTAGATATGTATAGTACACTGTTCCCTATGCATTTATAATTTTGGTGATGCTGGGTCTTTGTTGCTGCCCAGCTTTTCTTTAGTGGACGGGCACAGGCCTCTCATTGTGGTGGCTTCTCTTGTTGCTGAGCTCAGGCTCTAGTGCATGGGCTTCAGTAGTTGCCATTGCCAGGCTCTAGAGCACAGGCTCAGTAGTTGTGGCATTCAGGCTTAGCTGCTGCTCAGCCTATGGCATCATTCCAGACCAGGAATCCTACCCACGTCTCCTGCATTAGCAGGTGGATTCTTTACCACTGAGCCACCAGGGAATTTGTGAAATATTTTTCCAGACCCAGCTGTCATGCCCTCATTACTCAGCTGAACAAAGAACAAACACAGCACTTTATGTTTCTTTGTTTTTGATAAAGCAG
Seq C2 exon
TAATTTCTATTTCTGATCTGAACATTATCTCCATGTTAGAGCTAGAGAAAGAGCCCAGGACTGTGATAACTGGTGTGAAAATAGCAAAAAACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047053:ENSBTAT00000063211:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTTGACTTTCGAGGATGTGG
R:
TTTTGCTATTTTCACACCAGTTATCA
Band lengths:
214-891
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development