HsaINT0186990 @ hg19
Intron Retention
Gene
ENSG00000197937 | ZNF347
Description
zinc finger protein 347 [Source:HGNC Symbol;Acc:16447]
Coordinates
chr19:53651934-53652620:-
Coord C1 exon
chr19:53652494-53652620
Coord A exon
chr19:53652066-53652493
Coord C2 exon
chr19:53651934-53652065
Length
428 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TTTTCCTTTCTTTTCATAAGCAG
3' ss Score
4.03
Exon sequences
Seq C1 exon
GGACAGGTGACATTCAGGGATGTGGCTATAGAATTCTCTCAGGAGGAGTGGACATGCCTGGACCCCGCTCAGAGGACTTTGTACAGGGACGTGATGTTGGAGAATTATAGGAACCTGGCCTCCCTGG
Seq A exon
GTGAGGATGACTTTCTTCCAGAAGTCAGGATCTGCCCCTGTGTATCTTTTCATTTTCCATGTGGCTCTCCTGGGAGCTCATGCATTGCTTGGCTGAGACTGAAGCTGTGTTGACTGAAAAATGAAAATCTCCATAATGTGGAAACTGGATTTTAATTTTCCTCTTCCTGATGTCACTGGAGGGTTTCAGGACTTTTAAAATATCCAATTCCCTGTTTTCTATCCCCATGCTTTGATTCAGTGGTTTTGGGATGAGAGCTATATATTTGCATATTATAGTGTTTCCTAACAATTTATAAAGAAGCATTTAGTGGATGAATTTTTGAAGTGTTTTTTTAGATACAGCTGTAAAGTCCTCCCTCCTCATGTAAACATAGGACTGGGACTCTGGAAAATCTACAGCCCATTGTTTTCCTTTCTTTTCATAAG
Seq C2 exon
CAGGAATCTCTTGTTTTGACCTCAGTATTATCTCTATGTTGGAGCAAGGGAAGGAGCCTTTCACTTTGGAGAGCCAAGTACAAATAGCAGGAAACCCAGATGGATGGGAATGGATCAAAGCTGTGATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197937-ZNF347:NM_001172675:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
NA
C2:
PF088545=DUF1824=PU(19.2=57.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAGGTGACATTCAGGGATG
R:
ATCACAGCTTTGATCCATTCCCA
Band lengths:
254-682
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)