HsaINT0186959 @ hg19
Intron Retention
Gene
ENSG00000196378 | ZNF34
Description
zinc finger protein 34 [Source:HGNC Symbol;Acc:13098]
Coordinates
chr8:146002843-146003549:-
Coord C1 exon
chr8:146003423-146003549
Coord A exon
chr8:146002963-146003422
Coord C2 exon
chr8:146002843-146002962
Length
460 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
AGTCCCTGTCTCCTTCCCAGGAG
3' ss Score
8.4
Exon sequences
Seq C1 exon
GCCGAGGTGACCTTCGAGGACGTGGCTGTGTACCTCTCCCGGGAGGAATGGGGCCGCCTGGGCCCTGCTCAGAGGGGCCTCTACAGGGACGTGATGCTGGAGACCTACGGGAACCTAGTCTCACTGG
Seq A exon
GTAAGGCCCTCACCAGAACTCAGCTCTGGGAACAGCCCTGGGGGCTAAGGGCTCAGCAGAGGCTGGGCTAGGGGCCTCACCCCCTGGGCACAGATAGGTGATGACCTTTATCCCAGGCAGGCACCTGATCTGAGAAGATGAGGGGAAGAGCAGTGCTGGGACCTTCCTGAGTCAGCCCTTCCCTTCCCTCTCGCCCCAGGTCCCAGGCAGACCCCTCCCTGGTAGGGCGGGGGACACCGGGGGGGCGGAGTTGCATACCTCCTAGTGGAGGGAACCCCTGAGCTCTCATTCCCTTATGCTCAGGACTGCCCCAGCCCAATCTCAGTGCCCTCCAGAGAGTGTCCAGGCTTCCATCACCCCCTCTGCCTGTGCCTCCCTTACCCTGCAGCCCCAGGGTGAGACAGCACTAGGTGCTGCCCTGTGTCCTTGGTACCAACCCCAGTCCCTGTCTCCTTCCCAG
Seq C2 exon
GAGTAGGACCTGCAGGCCCCAAGCCTGGAGTGATCTCGCAGTTGGAGCGAGGGGATGAGCCCTGGGTCCTGGATGTTCAGGGCACCTCTGGGAAAGAGCACCTGAGAGTCAACAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196378-ZNF34:NM_030580:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=NA C2=0.678
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGGTGACCTTCGAGGAC
R:
CTGGGCTGTTGACTCTCAGGT
Band lengths:
246-706
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)