MmuINT0179715 @ mm10
Intron Retention
Gene
ENSMUSG00000048921 | Zfp689
Description
zinc finger protein 689 [Source:MGI Symbol;Acc:MGI:1918381]
Coordinates
chr7:127448363-127449158:-
Coord C1 exon
chr7:127448654-127449158
Coord A exon
chr7:127448477-127448653
Coord C2 exon
chr7:127448363-127448476
Length
177 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
GACTGGTTCTCCTTCCCCAGGAT
3' ss Score
8.94
Exon sequences
Seq C1 exon
CGCAGCGCCATTACACTTTAGGGCAAGGAGGTTAAGAAGTCGGCATGGCGTTCGGGTCAATAAAATCGATAGCTGGAACCTGCCTGTGTTCTAGGCAGCGGTGGTGCAGGAGCAGCGCCGCCATCTTCCCCGAAGGCATCTTCCGGTGCCTCTCACCCAAGTTCCAGCGGGAGTTCCCTGAATAACGGTCTGTGTCGGGCCGCCCGGCCCCTCAGGCAGCCGATTCAGATTTCCTCCGGGCCTTCCCGACGGAGCTTCTAGGTCTCCGGGTCCCCGTGGCAAGGCCGGGGAGCAGGTCCGATGGCGCCACCTTCGGCTCCGCTTCTCCTGCGGGCAGTCGGAGAGGCTGGACCTACTCGGAAAAGGGGCAGGAGGCCAAGGGCCTTGAAGTTCGTGGACGTGGCCGTGTACTTCTCCTCGGAGGAGTGGGGGTGTCTGCAGCCCGCTCAGAGGACTCTGTACCGGGATGTGATGCGCGAGACCTACGGCCTCCTGGGCGCGCTCG
Seq A exon
GTGAGGCCCGGCCCAATCTGCTTACGCGGGGCCTAAGGGATGATGGAGCTTGAGGGCGGGGTAGAGTGGGGGCAGGGAGCCTAGGGTCCTGACCTGCGATCGGCTTGTTAGGGGTTGGCGTTTATTTTTTAGCATCCTTTCTTCGGGCCAGCTCTCTGACTGGTTCTCCTTCCCCAG
Seq C2 exon
GATGCGCAGGTCCCAAACCAGCTCTCATCTCCTGGTTGGAACGAAATACCGATGACTGGGAACCAGCAGCCCTAGATCCGCAGGAGTACCGGAGATGGGTAACATTCCAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048921:ENSMUST00000053392:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=NA C2=0.077
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=59.4)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACCTACTCGGAAAAGGGG
R:
GGTACTCCTGCGGATCTAGGG
Band lengths:
248-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types