BtaINT0165978 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018094 | ZNF689
Description
Bos taurus zinc finger protein 689 (ZNF689), mRNA. [Source:RefSeq mRNA;Acc:NM_001083746]
Coordinates
chr25:27017923-27018793:-
Coord C1 exon
chr25:27018245-27018793
Coord A exon
chr25:27018037-27018244
Coord C2 exon
chr25:27017923-27018036
Length
208 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
ACTGGTTCTCCTTCCCCCAGGGT
3' ss Score
11.1
Exon sequences
Seq C1 exon
ATCACACTTGAGGGCAAAGAGGTTAGGCAGCCCGCATGGCGCTCCGGTCAATAAAATCGATAGCTGGAAGCTGCCTGTGTCTCAGGCAAAGGCGGTGCAGTAGCGGCGCCGCCATTTTCCCCGAAGGCATCTTCCGGTGCCTTTCATCCAAGTTCGGGCAGGAGTTTCCTGAATAACAGCGAAAGGTTTCCGTTAGCCCCGCAGGCGGCTGATTCCGGTTCCCGCCGGGCCTCCCCAGCACGCTCCGCACGGGTCCGGCGGGGGCTCCCAAATCCCCGGCCCCTCCAGCCCCCAGGGGCCGACGCTGGGACGGGCAAGGCCGTGGTGCCAGCTTCTCGGGTCCAATGGCGCGGCCTTCGGCTCCGCTTCCCGCGCGGGGACCAGGAGAGGCCAGACCCGGCCGGAGAAGGGGAAGGAGACCGAGGGCGGTGAAGTTCGGGGACGTGGCCTTGTACTTCTCCCGGGAGGAATGGGGGTGTCTGCGGCCCGCGCAGAGGGCCCTATACCGGGACGTGATGCAGGAGACCTACGGCCACCTGGGCGCGCTCG
Seq A exon
GTGAGGCCCGGCCCAGTCTGCTTCCGCGGCCCGAAGGGATGGAGGAGCTGGGGGTGGGAGGAGGCAGGGAGTGTAGAAGTCCAGGGTCCTGGCCTGCTACCAGGTTGTCAGGGGAGGAGGACGGGGGCTGGGCAGATGATGCCACCGGGTAAATCAATCTACCCAGCATTGTGTATGAGCTGGGCCTGACTGGTTCTCCTTCCCCCAG
Seq C2 exon
GGTGCGCAGGTCCCAAACCAGCCCTCATCTCCTGGTTGGAACGAAATACCGATGATTGGGAAACGGCTGCCCTGGATCCACAGGAGTGCCCAAAAGGGGTAGCAGTCCAAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018094:ENSBTAT00000018399:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.435 A=NA C2=0.436
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=59.4)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTTCTCGGGTCCAATGG
R:
GGCAGCCGTTTCCCAATCATC
Band lengths:
292-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]