RnoINT0168493 @ rn6
Intron Retention
Gene
ENSRNOG00000018877 | Zfp629
Description
zinc finger protein 629 [Source:RGD Symbol;Acc:1306257]
Coordinates
chr1:198899305-198900375:-
Coord C1 exon
chr1:198899904-198900375
Coord A exon
chr1:198899419-198899903
Coord C2 exon
chr1:198899305-198899418
Length
485 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
GACTGGTTCTCCTTCCCCAGGAT
3' ss Score
8.94
Exon sequences
Seq C1 exon
CATGGCGTTTGGGTCAATAAAATCGATAGCTGGAACCTGCCTGTGTTTTAGGCAGCGGTGGTGCAGGAGCGGCGCCGCCATCTTCCCCGAAGGCATCTTCCGGTGCTTCTCACCCAAGTTCCAGCAGGAGTTCCCTGAATAACGGGGCGGTCTGTGTCTGGCCGCCCGGCCCCTCAGGCAGCCGATTCAGATTTCCTCCCGGCCGAAGGCCGGGCTTCTAAGTCTCGGGGTACGCGGTGCCCGGGGCAAGGCCGGGGAGCAGGTCCAATGGCGCCGCCTTCGGCCCCGCTGCTTGAGCAGGCACCCGGAGAGGTTGGACCTACTCGGAGAAGGGGCAGGAGACCAAGGGCCTTGAAGTTCGCGGATGTGGCCGTGTACTTCTCCTCGGAGGAGTGGGGGCGTCTGCGGCCCGCGCAGAGGACTCTGTACCGGGATGTGATGCGCGAGACCTACGGCCTCCTGGGCGCGCTCG
Seq A exon
GTGAGGCCCGGCCCAATCTGCTTACGCGGGGCCTAAGGGATGATGGAGCTTGAGGGCGGGGTAGAGTGGGGGCAGGGATCCCGGGGTCCTGACCTGCGATCGGTTTGTTCGGGGTTGGGACACAGCATCGGCATATATTCTTTAGCATCATCTCTCGAGGCCAGCCCGCTGACTGGTTCTCCTTCCCCAGGATGCGCAGGTCCCAAACCAGCTCTCATCACCTGGTTGGAACGAAATACTGATGATTGGGAACCCGCAGCCCTAGATCCGCAGGAGTACCGGAGATGGGTAACATTCCAGAGAAGGCCCAATCTGCTTACGCGGGGCCTAAGGGATGATGGAGCTTGAGGGCGGGGTAGAGTGGGGGCAGGGATCCCGGGGTCCTGACCTGCGATCGGTTTGTTCGGGGTTGGGACACAGCATCGGCATATATTCTTTAGCATCATCTCTCGAGGCCAGCCCGCTGACTGGTTCTCCTTCCCCAG
Seq C2 exon
GATGCGCAGGTCCCAAACCAGCTCTCATCACCTGGTTGGAACGAAATACTGATGATTGGGAACCCGCAGCCCTAGATCCGCAGGAGTACCGGAGATGGGTAACATTCCAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018877:ENSRNOT00000024969:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.362 A=NA C2=0.103
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=59.4)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTTCTAAGTCTCGGGGTA
R:
GGTACTCCTGCGGATCTAGGG
Band lengths:
351-836
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]