RnoEX0101583 @ rn6
Exon Skipping
Gene
ENSRNOG00000018877 | Zfp629
Description
zinc finger protein 629 [Source:RGD Symbol;Acc:1306257]
Coordinates
chr1:198894000-198910489:-
Coord C1 exon
chr1:198910357-198910489
Coord A exon
chr1:198899305-198899418
Coord C2 exon
chr1:198894000-198895832
Length
114 bp
Sequences
Splice sites
3' ss Seq
GACTGGTTCTCCTTCCCCAGGAT
3' ss Score
8.94
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
GTAGTGTCTGCAGGCCACTCAGAAGGCGACCAATAGAACCAACCTGGGGTTGCTCCGTGGCGCGGGTTCAGTGTCTTTCCTGTTCTGGGCTGAAGTATCTCTTGGAAGAGGAGCATCCTCTGCAGGGTGTCAG
Seq A exon
GATGCGCAGGTCCCAAACCAGCTCTCATCACCTGGTTGGAACGAAATACTGATGATTGGGAACCCGCAGCCCTAGATCCGCAGGAGTACCGGAGATGGGTAACATTCCAGAGAA
Seq C2 exon
AAACCAGGACCAGGCAGAAGAATGAAGAGAAGGAAGTATTCCCACCTAAGGATGTACCCCGAAAGGGGAAGCGAGGGCGGAAGCCCAGCAAACCCCGGCTGATTGCCAGGCAGACATCCGGCGGCCCCATCTGCCCTGACTGTGGCTGTACCTTCCCTGACCTCCCCGCCCTGGAGAGCCACAAGTGCGCCCAGAATCTGAAGAAACCCTACCCCTGCCCGGATTGTGGGCGCCGCTTTTCCTACCCATCCCTGTTGGTCAGTCACAGGCGGGCACACTCTGGTGAGTGCCCTTACGTTTGTGACCAGTGTGGCAAACGTTTTTCCCAGAGGAAAAACCTGTCTCAGCACCAAGTCATACACACAGGAGAGAAGCCCTACCACTGCCCTGACTGTGGCCGCTGCTTTCGACGGAGCCGGTCCTTGGCCAATCACCGGACCACGCACACCGGTGAGAAGCCTCATCAGTGCCCTAGTTGCGGGCGTCGCTTCGCCTATCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018877_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.103 C2=0.152
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0009621=zf-C2H2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTGTCTGCAGGCCACTCAG
R:
GGATGTCTGCCTGGCAATCAG
Band lengths:
251-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]