BtaEX0041496 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018094 | ZNF689
Description
Bos taurus zinc finger protein 689 (ZNF689), mRNA. [Source:RefSeq mRNA;Acc:NM_001083746]
Coordinates
chr25:27014540-27018793:-
Coord C1 exon
chr25:27018245-27018793
Coord A exon
chr25:27017923-27018036
Coord C2 exon
chr25:27014540-27015944
Length
114 bp
Sequences
Splice sites
3' ss Seq
ACTGGTTCTCCTTCCCCCAGGGT
3' ss Score
11.1
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
AATAAAATCGATAGCTGGAAGCTGCCTGTGTCTCAGGCAAAGGCGGTGCAGTAGCGGCGCCGCCATTTTCCCCGAAGGCATCTTCCGGTGCCTTTCATCCAAGTTCGGGCAGGAGTTTCCTGAATAACAGCGAAAGGTTTCCGTTAGCCCCGCAGGCGGCTGATTCCGGTTCCCGCCGGGCCTCCCCAGCACGCTCCGCACGGGTCCGGCGGGGGCTCCCAAATCCCCGGCCCCTCCAGCCCCCAGGGGCCGACGCTGGGACGGGCAAGGCCGTGGTGCCAGCTTCTCGGGTCCAATGGCGCGGCCTTCGGCTCCGCTTCCCGCGCGGGGACCAGGAGAGGCCAGACCCGGCCGGAGAAGGGGAAGGAGACCGAGGGCGGTGAAGTTCGGGGACGTGGCCTTGTACTTCTCCCGGGAGGAATGGGGGTGTCTGCGGCCCGCGCAGAGGGCCCTATACCGGGACGTGATGCAGGAGACCTACGGCCACCTGGGCGCGCTCG
Seq A exon
GGTGCGCAGGTCCCAAACCAGCCCTCATCTCCTGGTTGGAACGAAATACCGATGATTGGGAAACGGCTGCCCTGGATCCACAGGAGTGCCCAAAAGGGGTAGCAGTCCAAAGAA
Seq C2 exon
AAACCAGAAAGAAGAATGAAGAGAAGGAAGTATTCCCGCCTAAGGAGGCACCCCGAAAGGGGAAGCGTGGCCGGCGGCCCAGCAAACCCCGCCTGATTCCCCGGCAGACCTCAGGAAGTCCCATCTGCCCTGACTGTGGTTGTACCTTTCCCGATCACCCAGCCCTGCAGAGGCACAAGTGTGCCCAGAATCTGAAAAAGCCTTACCCTTGCCCAGACTGTGGACGCCGCTTTTCCTACCCGTCCCTGCTGGTCAGTCATCGGCGGGCACACTCTGGGGAGTGTCCCTACGTTTGTGACCAGTGTGGCAAGCGGTTCTCCCAGCGCAAGAACCTCTCCCAGCACCAGGTCATCCACACAGGCGAGAAGCCCTACCACTGTCCTGACTGCGGCCGCTGCTTCCGGAGGAGTCGGTCCTTGGCCAATCACCGGACCACGCACACGGGTGAAAAACCCCACCAGTGCCCCAGCTGCGGGCGTCGCTTCGCCTACCCCTCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018094-'2-2,'2-0,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.435 A=0.436 C2=0.145
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=59.4)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0009621=zf-C2H2=WD(100=5.3),PF0009621=zf-C2H2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGTGGCCTTGTACTTCTCC
R:
TACAACCACAGTCAGGGCAGA
Band lengths:
253-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development